Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.6e-222 775.8 403 100.0
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.0e-187 657.9 406 83.0
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 7.0e-181 637.5 403 80.9
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 2.7e-132 476.1 424 60.6
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.3e-131 473.8 406 63.3
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 2.3e-131 473.0 441 59.0
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 3.0e-131 472.6 420 62.6
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 3.0e-131 472.6 414 62.3
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 5.1e-131 471.9 424 62.7
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 5.1e-131 471.9 407 63.1
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 5.1e-131 471.9 432 58.6
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 5.1e-131 471.9 416 62.7
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 6.6e-131 471.5 452 58.2
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 8.6e-131 471.1 423 61.2
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 1.5e-130 470.3 407 63.9
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 4.3e-130 468.8 405 63.7
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 4.3e-130 468.8 417 62.4
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 5.6e-130 468.4 382 66.2
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.6e-130 468.4 382 66.2
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 5.6e-130 468.4 409 63.1
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 5.6e-130 468.4 409 63.1
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 9.5e-130 467.6 403 61.5
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.2e-129 467.2 395 63.8
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 1.2e-129 467.2 409 62.8
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.6e-129 466.8 407 62.7
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 1.6e-129 466.8 405 63.0
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 3.6e-129 465.7 425 60.7
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 4.7e-129 465.3 421 59.9
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 6.2e-129 464.9 412 62.6
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 6.2e-129 464.9 405 62.5
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 6.2e-129 464.9 414 61.8
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 8.1e-129 464.5 413 60.8
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.1e-128 464.2 412 62.6
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.1e-128 464.2 404 62.1
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 1.4e-128 463.8 451 57.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.4e-128 463.8 407 60.9
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.8e-128 463.4 415 61.7
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 2.3e-128 463.0 410 63.4
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.3e-128 463.0 409 60.9
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 3.1e-128 462.6 407 61.7
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.1e-128 462.6 382 65.7
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 3.1e-128 462.6 447 57.9
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.2e-128 461.8 400 63.0
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 6.8e-128 461.5 425 60.5
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 6.8e-128 461.5 409 61.6
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 6.8e-128 461.5 425 60.7
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 8.9e-128 461.1 416 60.3
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.2e-127 460.7 445 58.4
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.5e-127 460.3 420 61.0
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.0e-127 459.9 407 61.4
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 2.6e-127 459.5 409 61.9
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 4.4e-127 458.8 420 61.4
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 5.8e-127 458.4 398 62.1
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 5.8e-127 458.4 404 62.6
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 5.8e-127 458.4 502 53.0
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.7e-126 456.8 368 64.7
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 3.8e-126 455.7 398 61.8
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 4.9e-126 455.3 394 62.9
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.9e-126 455.3 460 56.7
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 6.4e-126 454.9 418 60.3
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 1.1e-125 454.1 446 58.1
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.1e-125 454.1 434 58.1
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.2e-125 452.6 440 57.7
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 4.1e-125 452.2 416 60.6
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.1e-124 449.9 410 61.5
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 2.7e-124 449.5 407 61.2
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 2.7e-124 449.5 356 66.0
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.7e-124 449.5 428 58.4
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.3e-123 447.2 417 60.2
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.7e-123 446.8 403 60.5
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.7e-123 446.8 441 57.6
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 3.0e-123 446.0 428 59.3
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 3.9e-123 445.7 447 57.3
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 5.1e-123 445.3 432 59.0
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 5.1e-123 445.3 406 61.8
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 6.6e-123 444.9 400 61.2
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 8.6e-123 444.5 374 62.0
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.1e-122 444.1 394 60.4
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.5e-122 443.7 430 56.7
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.9e-122 443.4 394 60.4
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.9e-122 443.4 395 60.3
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.9e-122 443.4 407 60.0
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.9e-122 443.4 387 64.1
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 2.5e-122 443.0 399 60.7
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 2.5e-122 443.0 399 60.7
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 2.5e-122 443.0 435 57.9
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.3e-122 442.2 429 58.0
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 5.6e-122 441.8 396 60.1
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.3e-122 441.4 428 57.9
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 7.3e-122 441.4 428 57.9
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.3e-122 441.4 442 56.3
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.8e-120 436.8 449 55.2
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 3.1e-120 436.0 520 50.6
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.1e-120 436.0 424 57.5
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 5.2e-120 435.3 404 58.7
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.3e-118 430.6 380 62.9
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 2.1e-116 423.3 432 54.6
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 2.7e-116 422.9 368 60.9
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.7e-115 420.2 414 57.5
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.0e-115 419.5 353 59.5
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 5.1e-115 418.7 353 59.2
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 6.6e-115 418.3 353 59.5
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 2.8e-113 412.9 438 55.3
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.8e-112 410.2 529 48.6
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 1.7e-110 403.7 434 53.7
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 4.9e-110 402.1 416 55.5
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 2.4e-109 399.8 357 60.2
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 9.3e-109 397.9 358 60.3
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 4.3e-106 389.0 349 61.9
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 5.6e-106 388.7 369 59.1
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.5e-103 380.6 217 86.2
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.5e-103 379.0 365 54.5
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.9e-102 375.6 323 58.8
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.4e-101 373.2 408 53.2
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.0e-99 366.3 338 60.4
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.4e-96 356.7 325 56.9
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 6.9e-96 355.1 390 55.1
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 9.0e-96 354.8 325 56.3
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.5e-95 354.0 316 59.5
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.4e-95 352.8 413 51.1
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.5e-95 352.4 382 53.9
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.9e-94 349.7 383 53.3
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.9e-90 337.0 357 55.7
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 4.8e-89 332.4 364 54.4
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 7.6e-87 325.1 277 64.6
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.9e-85 320.5 277 61.4
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.7e-84 316.6 364 51.9
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.7e-78 297.4 360 48.1
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 6.1e-76 288.9 337 51.0
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 5.1e-75 285.8 257 61.1
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.6e-66 256.9 338 47.0
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 7.7e-63 245.4 283 51.2
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 1.9e-61 240.7 373 41.3
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 3.2e-61 240.0 235 56.2
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 8.8e-59 231.9 254 52.0
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 7.0e-56 222.2 125 86.4
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.2e-52 211.5 223 56.5
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 6.8e-51 205.7 210 56.7
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.8e-46 189.9 295 41.4
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 9.8e-42 175.3 107 78.5
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 2.2e-41 174.1 174 51.7
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.6e-37 159.5 95 84.2
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.4e-35 154.8 89 86.5
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 8.9e-35 152.1 88 86.4
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 2.5e-29 134.0 75 89.3
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.0e-26 124.4 123 53.7
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.6e-21 106.3 82 73.2
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.6e-20 104.8 91 65.9
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 8.1e-20 102.4 55 85.5
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 2.0e-18 97.8 91 53.8
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 7.5e-18 95.9 52 82.7
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 9.9e-18 95.5 72 63.9
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.2e-17 94.4 67 67.2
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.2e-16 90.5 52 80.8
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 9.2e-16 89.0 61 65.6
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.6e-15 88.2 52 78.8
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 6.0e-15 86.3 57 71.9
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 2.5e-13 80.9 52 73.1
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 2.0e-10 71.2 40 80.0
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.0e-10 71.2 68 55.9
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.3e-09 68.6 39 79.5
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 2.2e-09 67.8 122 38.5
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 8.4e-09 65.9 57 50.9
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 4.1e-08 63.5 100 41.0
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 9.2e-08 62.4 36 86.1
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 3.5e-07 60.5 75 46.7
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 6.0e-07 59.7 91 38.5
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.3e-06 58.5 40 70.0
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.3e-06 57.8 31 71.0
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 5.1e-06 56.6 115 36.5


User provided reference genes

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