Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 5.0e-295 1016.9 474 100.0
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 2.4e-217 758.8 447 76.5
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 6.7e-199 697.6 442 72.4
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 1.9e-198 696.0 454 70.3
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 3.7e-197 691.8 447 71.1
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.1e-196 690.3 440 71.6
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.4e-196 689.9 434 72.1
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 3.1e-196 688.7 437 72.1
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 6.9e-196 687.6 452 69.9
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 6.9e-196 687.6 467 68.3
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 6.9e-196 687.6 454 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 9.0e-196 687.2 424 75.2
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 2.6e-195 685.6 452 69.2
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 4.5e-195 684.9 434 71.9
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 7.6e-195 684.1 439 70.8
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 2.9e-194 682.2 455 69.0
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 2.9e-194 682.2 435 70.8
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.9e-194 682.2 443 70.0
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 3.8e-194 681.8 436 70.6
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 8.4e-194 680.6 451 67.6
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 1.1e-193 680.2 466 67.6
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.9e-193 679.5 436 70.6
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 3.2e-193 678.7 444 70.3
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 5.5e-193 677.9 436 70.9
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 5.5e-193 677.9 435 70.6
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 9.3e-193 677.2 435 71.0
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.2e-192 676.8 444 70.3
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 3.5e-192 675.2 435 71.0
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 3.5e-192 675.2 444 69.8
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 4.6e-192 674.9 440 70.2
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 6.0e-192 674.5 439 70.4
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 1.0e-191 673.7 457 67.4
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.0e-191 673.7 435 70.6
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 1.0e-191 673.7 436 69.7
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.3e-191 673.3 453 68.9
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 3.9e-191 671.8 455 68.8
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 5.1e-191 671.4 459 67.1
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 5.1e-191 671.4 436 70.0
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 6.7e-191 671.0 457 68.1
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 6.7e-191 671.0 435 70.3
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 6.7e-191 671.0 436 70.4
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 6.7e-191 671.0 439 69.9
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.5e-190 669.8 445 68.3
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 1.5e-190 669.8 440 69.1
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 1.9e-190 669.5 457 68.1
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.9e-190 669.5 440 69.3
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 1.9e-190 669.5 439 70.2
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 1.9e-190 669.5 434 70.7
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 2.5e-190 669.1 440 69.1
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 3.3e-190 668.7 434 69.1
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 3.3e-190 668.7 435 70.1
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.3e-190 668.3 442 69.5
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 5.7e-190 667.9 437 70.0
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 5.7e-190 667.9 435 70.8
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 5.7e-190 667.9 437 69.3
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 7.4e-190 667.5 445 68.1
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 9.6e-190 667.2 457 67.8
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 1.3e-189 666.8 435 70.3
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 1.3e-189 666.8 436 70.4
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.6e-189 666.4 438 68.7
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 2.8e-189 665.6 438 68.9
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 4.8e-189 664.8 437 69.8
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 6.3e-189 664.5 438 68.7
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 6.3e-189 664.5 436 69.7
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 8.2e-189 664.1 438 69.2
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 1.4e-188 663.3 439 69.0
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.4e-188 663.3 438 68.9
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 2.4e-188 662.5 445 68.5
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 2.4e-188 662.5 438 68.5
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 4.1e-188 661.8 438 68.5
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 5.3e-188 661.4 441 68.7
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 5.3e-188 661.4 436 69.0
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 5.3e-188 661.4 436 69.0
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 9.0e-188 660.6 438 68.5
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 1.5e-187 659.8 448 67.6
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 1.5e-187 659.8 448 67.6
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 2.0e-187 659.4 438 68.3
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 4.5e-187 658.3 444 67.6
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 4.5e-187 658.3 441 69.6
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 2.2e-186 656.0 484 63.6
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 2.2e-186 656.0 484 63.6
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.2e-186 656.0 452 67.0
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 2.5e-185 652.5 439 69.5
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 3.2e-185 652.1 468 65.6
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.6e-184 649.8 444 68.5
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.6e-184 648.7 467 65.3
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.3e-183 646.7 447 66.4
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 3.3e-182 642.1 443 67.0
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 3.3e-182 642.1 449 65.9
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 4.3e-182 641.7 453 66.0
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.0e-178 630.6 439 67.0
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 3.6e-176 622.1 461 64.6
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 6.7e-175 617.8 477 62.1
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 8.8e-175 617.5 399 70.9
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 2.0e-174 616.3 435 66.2
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 5.9e-171 604.7 381 70.9
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.8e-167 593.2 436 64.4
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 4.7e-160 568.5 409 64.8
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 2.0e-155 553.1 450 59.1
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 2.7e-155 552.7 465 58.3
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 3.2e-153 545.8 437 58.8
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 2.7e-147 526.2 440 58.4
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 6.3e-141 505.0 410 60.7
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 1.3e-133 480.7 327 67.9
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.4e-132 476.5 302 71.2
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 4.6e-131 472.2 303 71.0
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 5.9e-131 471.9 386 58.5
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 2.5e-121 439.9 286 70.3
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 5.6e-113 412.1 279 67.4
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.2e-69 267.3 164 73.2
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 4.3e-65 253.1 177 64.4
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.8e-64 249.6 198 61.6
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.5e-57 228.0 134 73.9
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 8.5e-53 212.2 135 70.4
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 4.2e-52 209.9 213 53.1
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 2.7e-51 207.2 368 37.5
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 2.7e-51 207.2 146 66.4
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 3.3e-49 200.3 240 45.4
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 2.8e-48 197.2 132 66.7
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 3.8e-45 186.8 121 70.2
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 6.5e-37 159.5 117 56.4
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 4.2e-36 156.8 126 59.5
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 2.7e-35 154.1 254 40.2
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.5e-28 131.7 93 64.5
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.9e-20 104.8 78 61.5
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.4e-18 98.6 92 52.2
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 3.4e-17 94.0 121 44.6
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 1.2e-14 85.5 55 67.3
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 3.9e-13 80.5 179 31.8
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 8.6e-13 79.3 68 54.4
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.9e-12 78.2 106 43.4
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 8.9e-10 69.3 65 55.4
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 1.3e-08 65.5 55 58.2


User provided reference genes

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