Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 0.0e+00 1875.5 921 100.0
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 0.0e+00 1132.9 877 67.0
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 0.0e+00 1097.4 883 65.0
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 1.4e-181 641.0 854 45.3
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 6.9e-176 622.1 896 42.5
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 1.3e-174 617.8 827 44.0
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 3.8e-174 616.3 854 43.7
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 5.0e-174 615.9 839 43.3
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.4e-173 614.4 843 43.5
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 1.9e-173 614.0 854 43.8
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 9.3e-173 611.7 841 44.2
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 2.7e-172 610.1 860 43.0
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.9e-172 608.6 824 43.3
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 1.0e-171 608.2 846 43.5
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 1.8e-171 607.4 841 44.4
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.0e-171 606.7 824 43.2
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 3.9e-171 606.3 824 43.3
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 1.9e-170 604.0 864 42.5
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 4.3e-170 602.8 834 44.8
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 7.4e-170 602.1 853 42.9
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 2.2e-169 600.5 856 41.9
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 2.2e-169 600.5 859 43.5
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 4.8e-169 599.4 836 44.7
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 8.2e-169 598.6 843 41.9
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 1.4e-168 597.8 854 42.6
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 1.4e-168 597.8 875 41.8
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 2.4e-168 597.0 866 43.4
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 3.1e-168 596.7 839 44.5
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 5.3e-168 595.9 836 44.5
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 1.2e-167 594.7 850 42.7
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 4.5e-167 592.8 837 45.2
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 4.5e-167 592.8 848 42.8
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.5e-167 592.8 870 42.6
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 1.0e-166 591.7 852 42.8
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.7e-166 590.9 855 44.3
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 1.7e-166 590.9 835 44.0
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 2.2e-166 590.5 828 44.4
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 2.9e-166 590.1 863 42.8
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 2.9e-166 590.1 823 44.1
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 3.8e-166 589.7 867 43.3
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 3.8e-166 589.7 877 42.8
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 8.5e-166 588.6 831 43.3
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 1.1e-165 588.2 845 44.4
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 1.4e-165 587.8 883 42.2
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.4e-165 587.8 852 43.8
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 1.9e-165 587.4 877 42.5
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 2.5e-165 587.0 848 42.5
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 9.4e-165 585.1 851 41.8
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.2e-164 584.7 870 41.7
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 1.6e-164 584.3 828 42.6
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 3.6e-164 583.2 842 44.2
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 4.7e-164 582.8 831 42.8
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 6.1e-164 582.4 831 43.0
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 1.0e-163 581.6 842 44.1
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 3.0e-163 580.1 848 41.4
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 6.7e-163 578.9 872 42.3
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 2.0e-162 577.4 881 41.4
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 7.4e-162 575.5 891 41.0
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 9.7e-162 575.1 836 44.1
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 1.7e-161 574.3 824 42.6
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.2e-161 573.9 853 42.0
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 2.2e-161 573.9 842 41.4
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 1.1e-160 571.6 829 42.9
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 1.4e-160 571.2 847 42.7
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 2.4e-160 570.5 824 42.1
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 4.1e-160 569.7 915 40.9
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 2.6e-159 567.0 829 43.7
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 2.2e-158 563.9 855 42.5
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 5.0e-158 562.8 819 43.2
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 6.5e-158 562.4 852 42.4
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 1.4e-157 561.2 825 42.1
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 1.4e-157 561.2 828 41.7
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 7.2e-157 558.9 829 42.6
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 7.2e-157 558.9 854 42.7
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 1.6e-156 557.8 860 41.3
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 1.6e-156 557.8 840 43.1
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 1.6e-156 557.8 825 42.9
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 8.0e-156 555.4 837 42.7
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 8.0e-156 555.4 837 42.7
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.4e-155 554.7 838 42.8
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 1.8e-155 554.3 828 42.6
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 6.7e-155 552.4 819 41.6
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 2.0e-154 550.8 809 43.6
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 2.6e-154 550.4 827 43.2
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 4.4e-154 549.7 819 42.9
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 7.4e-154 548.9 856 41.9
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 4.8e-153 546.2 918 40.2
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 5.3e-152 542.7 841 42.0
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.9e-150 537.0 824 41.6
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 5.0e-150 536.2 795 42.3
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 2.0e-143 514.2 888 39.8
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 5.0e-142 509.6 825 39.5
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 5.0e-142 509.6 831 41.4
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.1e-141 508.4 920 36.7
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 7.2e-141 505.8 845 39.6
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 5.2e-139 499.6 793 40.5
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 3.1e-136 490.3 773 40.4
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.3e-123 447.6 768 39.7
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.0e-110 405.6 556 43.5
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 8.1e-108 396.0 776 37.0
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 9.5e-101 372.5 324 61.7
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.9e-85 321.6 221 66.1
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 4.3e-85 320.5 338 49.7
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.2e-82 312.4 255 59.2
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 3.7e-76 290.8 204 64.2
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 9.9e-74 282.7 828 30.3
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.6e-63 248.8 354 45.2
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 8.2e-60 236.5 362 42.3
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.9e-57 228.0 592 33.1
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.9e-57 228.0 592 33.1
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 2.3e-54 218.4 325 43.7
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 7.4e-53 213.4 117 79.5
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 5.9e-50 203.8 254 44.5
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.0e-49 203.0 217 47.5
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.5e-48 197.2 170 59.4
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.3e-44 186.0 195 47.2
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.3e-38 165.2 106 74.5
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.0e-38 164.9 93 80.6
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 5.7e-37 160.6 241 39.4
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 7.0e-35 153.7 549 29.1
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 1.1e-32 146.4 465 29.5
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 6.7e-30 137.1 313 31.6
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.8e-28 131.7 87 72.4
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 2.8e-28 131.7 79 78.5
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 6.3e-28 130.6 79 78.5
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 8.3e-28 130.2 299 34.1
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 2.8e-15 88.6 218 26.6
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 6.3e-12 77.4 49 65.3
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.1e-11 76.6 51 72.5
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.4e-11 76.3 66 51.5
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.1e-08 66.6 66 51.5
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 1.6e-07 62.8 32 75.0
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 2.8e-07 62.0 99 37.4
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 8.9e-06 57.0 67 46.3


User provided reference genes

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