Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 0.0e+00 1104.0 557 100.0
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 9.5e-237 823.5 549 71.8
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 7.0e-224 780.8 539 70.9
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 1.5e-205 719.9 504 72.0
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 4.3e-189 665.2 545 59.1
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 9.6e-189 664.1 537 59.4
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 2.8e-188 662.5 537 59.2
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 8.1e-188 661.0 534 60.1
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.4e-187 660.2 534 59.2
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 2.6e-186 656.0 535 59.1
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 3.4e-186 655.6 535 59.1
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 5.8e-186 654.8 544 57.2
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 5.8e-186 654.8 535 58.9
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 7.6e-186 654.4 534 58.6
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.7e-185 653.3 537 58.1
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 2.2e-185 652.9 534 58.8
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 2.9e-185 652.5 534 58.8
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 3.8e-185 652.1 537 58.8
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 1.1e-184 650.6 535 58.1
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 1.1e-184 650.6 535 58.1
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 1.4e-184 650.2 535 58.1
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 1.4e-184 650.2 534 59.0
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 7.1e-184 647.9 535 58.1
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 9.3e-184 647.5 547 57.2
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 1.2e-183 647.1 534 58.8
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.7e-183 646.0 535 57.9
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 1.3e-182 643.7 534 58.4
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 1.1e-181 640.6 535 57.8
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.5e-181 640.2 537 57.4
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 5.6e-181 638.3 547 57.0
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 9.6e-181 637.5 534 58.2
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 1.6e-180 636.7 537 58.8
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 4.8e-180 635.2 567 54.3
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.8e-180 635.2 547 55.9
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 4.8e-180 635.2 547 55.9
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 6.2e-180 634.8 535 57.4
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 8.1e-180 634.4 537 56.6
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 8.1e-180 634.4 547 55.8
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.8e-179 633.3 534 58.2
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 2.4e-179 632.9 535 57.2
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 2.4e-179 632.9 572 55.9
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 3.1e-179 632.5 535 57.4
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 3.1e-179 632.5 535 57.2
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 2.6e-178 629.4 596 53.0
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 3.4e-178 629.0 596 53.0
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 5.8e-178 628.2 537 57.5
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 1.0e-177 627.5 534 56.7
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 1.3e-177 627.1 535 56.6
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 1.3e-177 627.1 535 56.6
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 1.7e-177 626.7 535 57.0
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 2.2e-177 626.3 537 57.4
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 8.4e-177 624.4 547 56.7
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 8.4e-177 624.4 535 56.4
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 2.5e-176 622.9 534 56.2
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 4.2e-176 622.1 534 57.3
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 5.5e-176 621.7 535 56.4
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 9.3e-176 620.9 537 57.0
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.2e-175 620.5 556 55.6
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 2.1e-175 619.8 537 56.4
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 7.9e-175 617.8 535 56.3
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 7.9e-175 617.8 537 56.2
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 1.0e-174 617.5 535 56.3
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 3.3e-173 612.5 549 56.8
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 7.4e-173 611.3 535 56.4
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 2.1e-172 609.8 534 56.2
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 8.2e-172 607.8 546 55.5
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 1.2e-170 604.0 535 55.1
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.5e-170 603.6 545 55.0
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 4.5e-170 602.1 534 54.7
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.6e-170 601.3 534 55.1
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 2.9e-169 599.4 529 56.0
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.8e-169 599.0 535 54.6
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 1.1e-168 597.4 538 55.2
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 4.2e-168 595.5 537 55.1
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 1.6e-167 593.6 543 54.9
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.6e-167 593.6 535 54.8
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 1.6e-167 593.6 537 55.3
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 3.5e-167 592.4 546 54.6
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.3e-166 590.5 535 54.6
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 1.8e-166 590.1 535 54.8
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.3e-164 583.9 628 48.6
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 2.2e-164 583.2 609 49.8
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 2.0e-162 576.6 537 54.7
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 2.0e-162 576.6 535 53.5
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.6e-159 567.0 539 53.1
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 1.0e-158 564.3 535 54.2
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 1.3e-153 547.4 537 52.7
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 6.5e-153 545.0 534 51.5
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 7.2e-152 541.6 525 53.1
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 2.2e-148 530.0 535 50.7
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 6.3e-148 528.5 549 51.2
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 3.2e-144 516.2 578 47.6
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 1.4e-142 510.8 451 54.5
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 2.3e-142 510.0 545 49.5
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.4e-139 500.7 401 59.1
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 1.9e-136 490.3 534 49.4
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 3.7e-132 476.1 441 52.6
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 4.8e-132 475.7 766 37.2
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 3.1e-131 473.0 541 47.1
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 4.1e-131 472.6 378 59.3
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 3.5e-130 469.5 633 43.1
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 1.7e-129 467.2 376 59.8
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.9e-128 463.8 534 46.4
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.1e-115 421.4 362 56.9
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.4e-115 421.0 314 60.8
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 1.2e-106 391.3 390 51.8
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 1.0e-105 388.3 401 51.6
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 2.3e-105 387.1 373 50.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 8.1e-103 378.6 491 43.2
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 5.4e-91 339.3 598 37.5
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 2.5e-88 330.5 277 58.1
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 1.9e-80 304.3 268 56.3
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 4.6e-74 283.1 380 43.9
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.1e-70 270.4 545 31.6
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 2.1e-66 257.7 326 44.5
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 2.7e-66 257.3 868 26.0
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 1.0e-65 255.4 225 52.0
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 2.8e-63 247.3 272 46.3
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 3.5e-58 230.3 163 68.7
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 7.9e-50 202.6 271 40.2
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 5.1e-49 199.9 176 54.5
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.3e-48 197.2 158 56.3
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 9.1e-46 189.1 229 46.3
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 3.4e-45 187.2 153 62.1
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 3.2e-43 180.6 155 58.7
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 3.3e-40 170.6 140 60.0
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 4.1e-38 163.7 165 52.7
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 5.3e-38 163.3 190 44.7
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 8.5e-36 156.0 144 54.2
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.2e-35 153.7 233 40.8
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.6e-32 144.4 153 52.3
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.4e-32 143.7 109 63.3
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.4e-32 143.7 153 51.6
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 7.0e-30 136.3 130 50.0
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 4.0e-25 120.6 184 38.6
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 7.0e-22 109.8 83 67.5
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.6e-16 91.3 105 47.6
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 7.5e-16 89.7 84 53.6
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.2e-10 72.4 73 49.3
Gohir.D03G058800 Gossypium hirsutum HOM05D003301 ORTHO05D003665 3.1e-06 57.8 245 24.1
Gorai.003G062700 Gossypium raimondii HOM05D003301 ORTHO05D003665 3.1e-06 57.8 245 24.1


User provided reference genes

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