Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.9e-270 935.3 469 100.0
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.1e-128 463.4 472 53.0
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.7e-98 364.0 499 45.5
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.8e-95 354.0 467 46.0
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 9.5e-89 331.6 448 45.5
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.2e-88 331.3 459 44.7
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 8.0e-88 328.6 465 43.4
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 1.4e-87 327.8 450 45.1
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.4e-87 327.8 479 42.8
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.3e-87 327.0 461 43.2
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.3e-87 327.0 468 41.7
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 5.2e-87 325.9 477 43.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 6.8e-87 325.5 470 42.8
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.8e-87 325.5 469 41.8
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 6.8e-87 325.5 467 43.3
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.0e-86 323.9 468 41.5
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 2.0e-86 323.9 470 43.0
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.6e-86 323.6 469 43.3
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 5.8e-86 322.4 480 42.1
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 7.5e-86 322.0 470 42.8
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 7.5e-86 322.0 464 41.4
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 7.5e-86 322.0 444 44.4
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.3e-85 321.2 464 41.6
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.3e-85 321.2 468 41.2
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.7e-85 320.9 462 42.9
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.2e-85 320.5 443 44.5
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.7e-85 319.7 453 44.2
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 3.7e-85 319.7 444 44.6
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 3.7e-85 319.7 473 42.1
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 6.4e-85 318.9 479 42.0
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 6.4e-85 318.9 463 43.6
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 6.4e-85 318.9 474 40.7
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 8.3e-85 318.5 458 43.7
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 8.3e-85 318.5 461 42.7
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 8.3e-85 318.5 461 42.7
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.1e-84 318.2 467 41.8
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.9e-84 317.4 452 43.4
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.9e-84 317.4 456 43.4
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.9e-84 317.4 443 44.9
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 3.2e-84 316.6 476 42.0
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 3.2e-84 316.6 440 45.0
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 4.1e-84 316.2 443 44.7
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.4e-84 315.8 445 43.8
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 7.1e-84 315.5 463 43.2
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 9.2e-84 315.1 465 42.6
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.2e-83 314.7 456 43.6
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.2e-83 314.7 489 41.3
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 1.6e-83 314.3 450 43.6
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 2.7e-83 313.5 473 40.6
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 3.5e-83 313.2 458 43.2
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 4.6e-83 312.8 471 42.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 6.0e-83 312.4 453 42.2
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 6.0e-83 312.4 443 42.2
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 6.0e-83 312.4 452 42.3
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.0e-82 311.6 461 41.6
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.3e-82 311.2 448 44.4
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.7e-82 310.8 464 42.7
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 2.3e-82 310.5 457 43.3
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 3.0e-82 310.1 450 42.4
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 3.0e-82 310.1 449 43.9
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.0e-82 310.1 439 43.7
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 3.0e-82 310.1 449 43.0
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 3.9e-82 309.7 458 43.0
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 5.1e-82 309.3 481 41.8
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 5.1e-82 309.3 483 40.8
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 6.6e-82 308.9 445 43.8
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 6.6e-82 308.9 471 42.5
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 6.6e-82 308.9 475 41.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 8.6e-82 308.5 459 42.3
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.1e-81 308.1 441 43.5
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.5e-81 307.8 448 42.4
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.5e-81 307.8 443 42.9
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 1.5e-81 307.8 444 43.2
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.9e-81 307.4 454 42.3
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.5e-81 307.0 449 43.7
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 2.5e-81 307.0 526 40.1
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.3e-81 306.6 439 42.8
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 3.3e-81 306.6 456 43.2
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 3.3e-81 306.6 471 41.0
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 7.3e-81 305.4 452 41.8
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 9.5e-81 305.1 444 41.9
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 9.5e-81 305.1 464 42.2
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.2e-80 304.7 490 41.6
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.2e-80 304.7 470 43.4
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 2.1e-80 303.9 461 42.5
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.8e-80 303.5 456 41.4
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.8e-80 303.5 460 40.7
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 3.6e-80 303.1 472 40.9
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.6e-80 303.1 445 43.6
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 3.6e-80 303.1 458 42.8
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 4.7e-80 302.8 479 40.7
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 6.2e-80 302.4 451 42.6
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 8.1e-80 302.0 446 42.8
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 8.1e-80 302.0 457 42.2
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.8e-79 300.8 489 40.7
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 2.3e-79 300.4 454 44.5
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.2e-78 298.1 457 42.0
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.2e-78 298.1 457 42.0
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.2e-78 298.1 457 42.0
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.0e-78 297.4 458 42.6
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 2.0e-78 297.4 474 41.1
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.0e-78 297.4 458 41.3
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 2.6e-78 297.0 442 41.0
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 3.4e-78 296.6 465 42.2
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.6e-78 295.4 455 41.8
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 7.6e-78 295.4 415 43.6
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 9.9e-78 295.0 439 40.3
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.3e-77 294.7 480 42.3
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.7e-77 294.3 473 41.4
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.7e-77 294.3 485 41.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 2.2e-77 293.9 454 41.2
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.9e-77 293.5 445 41.3
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 2.9e-77 293.5 448 41.3
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.7e-77 293.1 457 41.6
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 3.7e-77 293.1 473 41.4
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 6.4e-77 292.4 446 40.8
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 6.4e-77 292.4 459 41.6
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 6.4e-77 292.4 459 41.6
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 8.3e-77 292.0 457 41.4
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 3.2e-76 290.0 453 41.7
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.1e-76 288.9 452 40.3
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 9.2e-76 288.5 427 41.7
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 7.8e-75 285.4 448 40.4
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 1.3e-74 284.6 418 42.3
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.9e-74 283.1 452 40.3
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 5.1e-74 282.7 525 37.0
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 8.6e-74 282.0 469 39.4
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.4e-71 274.6 475 39.8
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 1.4e-71 274.6 439 41.9
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.4e-70 270.0 455 40.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 5.8e-70 269.2 467 39.0
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 7.1e-68 262.3 377 41.6
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.7e-66 257.7 298 48.7
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 6.6e-66 255.8 304 51.3
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.6e-65 252.7 460 38.7
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 9.6e-65 251.9 432 40.7
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.0e-59 232.6 263 50.2
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 1.6e-56 224.6 503 35.2
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 8.4e-53 212.2 331 39.6
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.6e-51 208.0 330 40.6
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 5.8e-46 189.5 319 41.4
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.9e-44 184.5 263 42.2
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 6.0e-43 179.5 488 32.2
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.3e-42 178.3 223 47.1
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.8e-39 167.9 322 37.6
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 3.1e-39 167.2 311 37.0
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 6.9e-39 166.0 201 44.3
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.5e-36 156.4 201 42.3
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.0e-34 152.1 201 43.3
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 4.1e-31 140.2 155 48.4
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.8e-29 133.7 147 50.3
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 8.5e-29 132.5 180 43.9
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.9e-28 131.3 125 54.4
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.4e-26 125.2 133 50.4
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 6.7e-26 122.9 281 34.9
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 1.5e-25 121.7 263 35.7
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.3e-25 120.2 414 29.0
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 7.4e-25 119.4 231 38.1
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.5e-22 111.7 133 48.9
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 3.7e-16 90.5 223 32.7
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 2.4e-15 87.8 156 34.6
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 2.4e-15 87.8 76 52.6
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 7.2e-12 76.3 81 54.3
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 9.4e-12 75.9 191 31.9
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.2e-11 75.5 82 45.1
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 6.3e-08 63.2 248 27.0
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.3e-08 63.2 88 40.9
CDE02G2261 Ceratophyllum demersum HOM05D002054 ORTHO05D004936 3.5e-06 57.4 115 33.0
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 7.7e-06 56.2 43 62.8


User provided reference genes

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