Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 8.6e-229 796.6 385 100.0
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 2.7e-81 306.6 373 47.5
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 3.6e-70 269.6 354 40.7
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 9.9e-68 261.5 358 41.9
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 1.9e-66 257.3 388 40.7
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 2.4e-66 256.9 358 38.8
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 2.4e-66 256.9 363 41.9
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 1.2e-65 254.6 352 40.1
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.6e-65 254.2 358 40.2
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 2.1e-65 253.8 358 39.9
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 7.9e-65 251.9 370 38.4
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 1.3e-64 251.1 357 39.2
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 1.3e-64 251.1 359 39.3
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 3.9e-64 249.6 373 38.9
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 6.7e-64 248.8 370 40.0
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 6.7e-64 248.8 354 39.5
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.1e-63 248.1 373 39.4
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 3.3e-63 246.5 367 37.3
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 4.3e-63 246.1 359 39.3
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 4.3e-63 246.1 287 44.3
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 5.6e-63 245.7 358 38.3
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 7.4e-63 245.4 287 44.3
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 7.4e-63 245.4 373 38.9
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 9.6e-63 245.0 357 38.1
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.3e-62 244.6 355 41.1
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 2.1e-62 243.8 359 40.1
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 2.8e-62 243.4 371 40.2
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 3.7e-62 243.0 286 43.7
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 4.8e-62 242.7 375 37.9
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 6.2e-62 242.3 357 38.4
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 8.1e-62 241.9 353 40.5
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 1.8e-61 240.7 358 39.9
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 1.8e-61 240.7 356 38.5
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 4.0e-61 239.6 388 37.6
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 5.3e-61 239.2 359 38.7
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 6.9e-61 238.8 367 37.9
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 9.0e-61 238.4 360 38.6
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 9.0e-61 238.4 353 38.0
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 9.0e-61 238.4 353 38.0
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 1.2e-60 238.0 297 41.8
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 1.5e-60 237.7 360 37.2
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 1.5e-60 237.7 365 37.0
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 2.0e-60 237.3 358 36.9
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 4.5e-60 236.1 353 38.8
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 5.8e-60 235.7 359 39.6
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 1.3e-59 234.6 266 45.1
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 1.3e-59 234.6 363 36.4
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 1.3e-59 234.6 363 36.4
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 1.7e-59 234.2 295 40.7
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 2.2e-59 233.8 356 38.8
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 2.2e-59 233.8 358 37.4
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 2.9e-59 233.4 357 38.9
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 3.8e-59 233.0 356 37.1
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 3.8e-59 233.0 371 35.8
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 4.9e-59 232.6 369 36.9
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 1.1e-58 231.5 284 43.0
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 1.4e-58 231.1 353 38.0
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.4e-58 231.1 358 38.3
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.2e-58 229.9 393 36.9
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 4.2e-58 229.6 339 38.6
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 4.2e-58 229.6 360 36.9
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 4.2e-58 229.6 288 42.4
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 7.1e-58 228.8 359 38.7
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 2.1e-57 227.3 358 38.3
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 2.1e-57 227.3 263 42.6
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 4.6e-57 226.1 285 40.0
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 4.6e-57 226.1 354 37.0
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 1.0e-56 224.9 379 36.4
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 1.8e-56 224.2 357 36.7
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 1.8e-56 224.2 362 34.0
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 3.9e-56 223.0 284 42.6
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 6.7e-56 222.2 258 41.5
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.9e-55 220.7 288 39.9
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 1.9e-55 220.7 310 41.0
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 2.5e-55 220.3 284 41.5
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 4.3e-55 219.5 353 37.1
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 4.3e-55 219.5 288 39.6
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 5.6e-55 219.2 358 34.9
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.1e-54 217.2 302 40.4
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 4.8e-54 216.1 355 36.9
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 8.2e-54 215.3 284 40.5
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.4e-53 213.8 353 34.6
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 6.9e-53 212.2 260 41.5
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.5e-52 211.1 357 37.0
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 5.8e-52 209.1 380 34.7
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 1.0e-51 208.4 284 40.1
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 1.7e-51 207.6 243 42.8
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 2.9e-51 206.8 284 40.1
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 3.8e-51 206.5 381 34.6
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 1.0e-48 198.4 379 33.8
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.3e-48 198.0 372 35.2
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.8e-48 197.6 363 35.0
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 4.3e-47 193.0 239 43.1
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 5.7e-47 192.6 380 32.9
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 5.7e-47 192.6 380 32.9
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 2.2e-46 190.7 284 38.0
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 3.7e-46 189.9 291 39.5
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 2.4e-45 187.2 358 33.0
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 9.0e-45 185.3 215 42.8
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.5e-42 177.2 354 31.9
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 3.3e-39 166.8 201 41.8
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 1.8e-37 161.0 226 39.8
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 4.5e-36 156.4 205 42.9
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 1.7e-35 154.5 344 33.4
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 1.4e-34 151.4 212 41.0
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 2.0e-31 141.0 194 38.1
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 2.5e-26 124.0 243 35.8
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.0e-23 114.4 285 30.2
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 2.1e-17 94.4 194 33.5
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 7.5e-15 85.9 162 35.2
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 1.7e-11 74.7 176 33.0
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.2e-11 74.3 71 46.5
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 5.0e-11 73.2 95 42.1
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 5.0e-11 73.2 84 46.4
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.8e-08 64.7 100 31.0
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.3e-08 64.3 100 31.0
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 2.3e-08 64.3 100 31.0
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 4.0e-08 63.5 100 31.0
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 1.2e-07 62.0 102 28.4
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 1.2e-07 62.0 97 29.9
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 1.5e-07 61.6 103 30.1
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 1.5e-07 61.6 102 31.4
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 2.0e-07 61.2 107 37.4
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 2.6e-07 60.8 97 30.9
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 4.4e-07 60.1 100 30.0
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 4.4e-07 60.1 97 30.9
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 4.4e-07 60.1 99 28.3
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 5.7e-07 59.7 99 31.3
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 5.7e-07 59.7 100 31.0
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 5.7e-07 59.7 100 31.0
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 7.5e-07 59.3 97 27.8
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 7.5e-07 59.3 97 26.8
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 9.8e-07 58.9 97 27.8
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 1.3e-06 58.5 99 30.3
Carub.0004s0727 Capsella rubella HOM05D002956 ORTHO05D008031 1.7e-06 58.2 97 25.8
CARHR118990 Cardamine hirsuta HOM05D002956 ORTHO05D008031 1.7e-06 58.2 97 26.8
AUR62000217 Chenopodium quinoa HOM05D002956 ORTHO05D008031 1.7e-06 58.2 142 27.5
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 1.7e-06 58.2 97 33.0
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 1.7e-06 58.2 97 27.8
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 2.2e-06 57.8 103 29.1
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 2.8e-06 57.4 97 26.8
AUR62007566 Chenopodium quinoa HOM05D005677 ORTHO05D006966 3.7e-06 57.0 197 27.4
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 3.7e-06 57.0 99 28.3
TAR369G0726 Trochodendron aralioides HOM05D002956 ORTHO05D008031 3.7e-06 57.0 97 29.9
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 4.8e-06 56.6 97 27.8
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 4.8e-06 56.6 100 30.0
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 6.3e-06 56.2 97 27.8
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 6.3e-06 56.2 97 30.9
Cc01_g06320 Coffea canephora HOM05D002956 ORTHO05D008031 8.3e-06 55.8 101 28.7


User provided reference genes

Program Settings