Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 8.4e-56 220.3 127 100.0
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 8.4e-40 167.2 127 72.4
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 2.4e-39 165.6 127 66.1
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 4.2e-39 164.9 127 66.9
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 4.2e-39 164.9 127 66.1
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 7.1e-39 164.1 127 66.9
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 9.3e-39 163.7 127 66.1
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 9.3e-39 163.7 127 66.1
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 9.3e-39 163.7 127 66.9
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 1.2e-38 163.3 127 66.1
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.2e-38 163.3 128 68.0
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.6e-38 162.9 127 66.9
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 1.6e-38 162.9 127 66.9
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.6e-38 162.9 128 68.0
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 1.6e-38 162.9 127 66.1
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 1.6e-38 162.9 127 66.1
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.6e-38 162.9 127 75.6
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.1e-38 162.5 127 65.4
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.1e-38 162.5 127 66.1
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 2.7e-38 162.2 127 66.1
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.7e-38 162.2 127 65.4
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.7e-38 162.2 127 66.1
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 2.7e-38 162.2 127 66.1
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 2.7e-38 162.2 127 66.1
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.5e-38 161.8 127 66.1
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 3.5e-38 161.8 127 64.6
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.5e-38 161.8 127 65.4
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 3.5e-38 161.8 127 65.4
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 3.5e-38 161.8 127 66.1
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 4.6e-38 161.4 127 65.4
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 4.6e-38 161.4 127 65.4
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 4.6e-38 161.4 128 68.0
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 7.9e-38 160.6 127 64.6
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 1.0e-37 160.2 127 63.0
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 1.0e-37 160.2 127 70.1
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-37 160.2 127 64.6
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-37 160.2 127 65.4
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.0e-37 160.2 127 65.4
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.0e-37 160.2 122 68.0
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 1.0e-37 160.2 127 64.6
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.3e-37 159.8 127 64.6
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 2.3e-37 159.1 128 66.4
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 2.3e-37 159.1 127 63.8
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 2.3e-37 159.1 127 64.6
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.0e-37 158.7 127 64.6
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 3.9e-37 158.3 127 64.6
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 3.9e-37 158.3 127 64.6
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.9e-37 158.3 127 64.6
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.9e-37 158.3 127 64.6
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 5.1e-37 157.9 127 63.8
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 5.1e-37 157.9 128 66.4
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 6.7e-37 157.5 127 63.8
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 8.7e-37 157.1 124 64.5
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 8.7e-37 157.1 127 63.8
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 8.7e-37 157.1 127 63.8
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 8.7e-37 157.1 127 64.6
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.1e-36 156.8 127 63.8
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.1e-36 156.8 126 64.3
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.9e-36 156.0 127 63.8
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.9e-36 156.0 122 65.6
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.5e-36 155.6 127 63.8
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 3.3e-36 155.2 126 63.5
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 3.3e-36 155.2 127 61.4
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 4.3e-36 154.8 124 64.5
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 5.6e-36 154.5 127 73.2
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.3e-35 153.3 127 62.2
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.3e-35 153.3 127 71.7
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 1.6e-35 152.9 126 61.1
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.6e-35 152.9 127 72.4
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.1e-35 152.5 127 59.1
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 2.1e-35 152.5 124 62.1
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 2.8e-35 152.1 126 61.9
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 3.7e-35 151.8 129 72.1
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 4.8e-35 151.4 126 61.9
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 6.2e-35 151.0 129 62.0
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 1.1e-34 150.2 125 62.4
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 1.1e-34 150.2 125 61.6
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 1.1e-34 150.2 124 62.1
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 1.1e-34 150.2 125 60.8
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 1.1e-34 150.2 126 61.1
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.4e-34 149.8 122 62.3
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 3.1e-34 148.7 127 68.5
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 4.0e-34 148.3 126 61.9
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 4.0e-34 148.3 127 70.1
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 6.9e-34 147.5 131 58.8
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 6.9e-34 147.5 131 58.8
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 6.9e-34 147.5 126 61.1
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 6.9e-34 147.5 129 60.5
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 6.9e-34 147.5 129 60.5
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 6.9e-34 147.5 129 71.3
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 6.9e-34 147.5 129 71.3
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 9.0e-34 147.1 127 70.1
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 1.2e-33 146.7 127 60.6
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 1.5e-33 146.4 127 60.6
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 2.0e-33 146.0 118 61.0
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 2.0e-33 146.0 120 61.7
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 2.0e-33 146.0 129 58.9
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.6e-33 145.6 122 59.8
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 2.6e-33 145.6 126 58.7
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 2.6e-33 145.6 129 58.9
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 2.6e-33 145.6 122 61.5
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 3.4e-33 145.2 122 59.8
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 4.5e-33 144.8 128 59.4
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 4.5e-33 144.8 129 58.1
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 4.5e-33 144.8 129 59.7
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 4.5e-33 144.8 129 58.9
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 5.8e-33 144.4 128 57.8
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 5.8e-33 144.4 129 59.7
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 7.6e-33 144.1 126 58.7
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 7.6e-33 144.1 128 60.2
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 7.6e-33 144.1 133 68.4
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 7.6e-33 144.1 127 66.9
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 9.9e-33 143.7 128 58.6
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 9.9e-33 143.7 125 57.6
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 2.2e-32 142.5 129 59.7
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 4.9e-32 141.4 128 57.0
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 8.4e-32 140.6 118 59.3
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 8.4e-32 140.6 118 59.3
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 3.9e-29 131.7 147 49.7
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 4.9e-24 114.8 86 64.0
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 4.6e-22 108.2 154 43.5
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 4.3e-20 101.7 120 44.2
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 6.3e-19 97.8 107 51.4
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 6.9e-18 94.4 84 58.3
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 5.9e-17 91.3 118 43.2
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 5.9e-17 91.3 106 48.1
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 2.2e-16 89.4 121 42.1
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.1e-15 87.0 84 53.6
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 1.2e-09 67.0 40 77.5
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 2.0e-09 66.2 55 63.6
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 6.5e-08 61.2 118 35.6
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 1.2e-06 57.0 43 62.8
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.1e-06 56.2 37 70.3


User provided reference genes

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