Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_6520 Physcomitrium patens HOM05D004819 ORTHO05D005654 0.0e+00 1335.1 660 100.0
Pp3c5_14560 Physcomitrium patens HOM05D004819 ORTHO05D005654 0.0e+00 1089.7 650 82.0
Mapoly0066s0100 Marchantia polymorpha HOM05D004819 ORTHO05D005654 8.4e-216 754.2 656 58.4
AagrBONN_evm.TU.Sc2ySwM_362.583 Anthoceros agrestis HOM05D004819 ORTHO05D005654 6.0e-206 721.5 646 56.5
Dinv15153 Davidia involucrata HOM05D004819 ORTHO05D005654 1.8e-202 709.9 642 54.4
Ciclev10004336m.g Citrus clementina HOM05D004819 ORTHO05D005654 5.3e-202 708.4 649 52.5
Actinidia40384 Actinidia chinensis HOM05D004819 ORTHO05D005654 3.4e-201 705.7 644 53.9
Glyma.07G238900 Glycine max HOM05D004819 ORTHO05D005654 3.2e-199 699.1 640 53.3
PSO761G0636 Papaver somniferum HOM05D004819 ORTHO05D005654 5.4e-199 698.4 629 55.0
Cfa015302 Carpinus fangiana HOM05D004819 ORTHO05D005654 9.3e-199 697.6 644 54.0
GSVIVG01034978001 Vitis vinifera HOM05D004819 ORTHO05D005654 1.2e-198 697.2 644 53.4
arahy.Tifrunner.gnm1.ann1.HD9JLY Arachis hypogaea HOM05D004819 ORTHO05D005654 2.1e-198 696.4 631 54.0
Manes.03G205800 Manihot esculenta HOM05D004819 ORTHO05D005654 2.7e-198 696.0 639 53.1
TAR365G0460 Trochodendron aralioides HOM05D004819 ORTHO05D005654 3.5e-198 695.7 646 52.8
Atru.chr4.3039 Acer truncatum HOM05D004819 ORTHO05D005654 4.6e-198 695.3 643 52.9
FvH4_4g19930 Fragaria vesca HOM05D004819 ORTHO05D005654 4.6e-198 695.3 647 52.9
arahy.Tifrunner.gnm1.ann1.ZA4S8T Arachis hypogaea HOM05D004819 ORTHO05D005654 6.0e-198 694.9 631 53.9
FAN12G0990 Fragaria x ananassa HOM05D004819 ORTHO05D005654 6.0e-198 694.9 647 52.9
Glyma.17G034800 Glycine max HOM05D004819 ORTHO05D005654 7.9e-198 694.5 655 52.5
Phvul.003G115600 Phaseolus vulgaris HOM05D004819 ORTHO05D005654 1.8e-197 693.3 643 52.9
RcHm_v2.0_Chr4g0425571 Rosa chinensis HOM05D004819 ORTHO05D005654 1.8e-197 693.3 641 53.7
PSO210G2958 Papaver somniferum HOM05D004819 ORTHO05D005654 3.0e-197 692.6 629 55.0
Hund03132 Selenicereus undatus HOM05D004819 ORTHO05D005654 3.0e-197 692.6 637 53.7
MD16G1152500 Malus domestica HOM05D004819 ORTHO05D005654 8.7e-197 691.0 621 54.1
FAN07G2526 Fragaria x ananassa HOM05D004819 ORTHO05D005654 1.9e-196 689.9 647 52.9
Nn2g14951 Nelumbo nucifera HOM05D004819 ORTHO05D005654 1.9e-196 689.9 651 51.8
CSS0034063 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 2.5e-196 689.5 638 52.7
Sopen01g024570 Solanum pennellii HOM05D004819 ORTHO05D005654 2.5e-196 689.5 642 53.1
Sc09g0007260 Simmondsia chinensis HOM05D004819 ORTHO05D005654 3.3e-196 689.1 648 53.4
Solyc01g058730.4 Solanum lycopersicum HOM05D004819 ORTHO05D005654 4.3e-196 688.7 642 53.3
QL06p012610 Quercus lobata HOM05D004819 ORTHO05D005654 7.4e-196 688.0 648 52.3
PGSC0003DMG400001205 Solanum tuberosum HOM05D004819 ORTHO05D005654 1.6e-195 686.8 642 53.1
VMungo1215G1911 Vigna mungo HOM05D004819 ORTHO05D005654 1.6e-195 686.8 621 53.9
Thecc.04G302500 Theobroma cacao HOM05D004819 ORTHO05D005654 8.1e-195 684.5 645 52.7
TPR.G25430 Trifolium pratense HOM05D004819 ORTHO05D005654 8.1e-195 684.5 643 52.6
TWI09G1587 Tripterygium wilfordii HOM05D004819 ORTHO05D005654 8.1e-195 684.5 644 52.2
EL10Ac3g05522 Beta vulgaris HOM05D004819 ORTHO05D005654 1.1e-194 684.1 645 52.9
Aqoxy2G02702 Aquilegia oxysepala HOM05D004819 ORTHO05D005654 1.4e-194 683.7 635 53.4
Lj3C833T2 Lonicera japonica HOM05D004819 ORTHO05D005654 1.8e-194 683.3 621 54.3
AUR62016223 Chenopodium quinoa HOM05D004819 ORTHO05D005654 3.1e-194 682.6 643 51.8
DCAR_030463 Daucus carota HOM05D004819 ORTHO05D005654 6.9e-194 681.4 629 52.8
SalBow8G2376 Salvia bowleyana HOM05D004819 ORTHO05D005654 6.9e-194 681.4 644 52.3
Lj4g0007943 Lotus japonicus HOM05D004819 ORTHO05D005654 9.0e-194 681.0 638 53.0
Ca_21436_v3 Cicer arietinum L. HOM05D004819 ORTHO05D005654 2.0e-193 679.9 643 51.6
Eucgr.H04055 Eucalyptus grandis HOM05D004819 ORTHO05D005654 2.0e-193 679.9 622 53.5
Lalb_Chr07g0182051 Lupinus albus HOM05D004819 ORTHO05D005654 2.6e-193 679.5 643 52.3
Potri.010G146800 Populus trichocarpa HOM05D004819 ORTHO05D005654 3.4e-193 679.1 631 53.1
Prupe.1G115700 Prunus persica HOM05D004819 ORTHO05D005654 4.5e-193 678.7 622 54.3
Rhsim04G0240100 Rhododendron simsii HOM05D004819 ORTHO05D005654 7.6e-193 677.9 656 51.5
Duzib212G0926 Durio zibethinus HOM05D004819 ORTHO05D005654 1.3e-192 677.2 646 51.4
Zm00001eb014900 Zea mays HOM05D004819 ORTHO05D005654 1.7e-192 676.8 623 54.3
Gorai.011G200900 Gossypium raimondii HOM05D004819 ORTHO05D005654 2.9e-192 676.0 643 52.1
Gohir.D10G179600 Gossypium hirsutum HOM05D004819 ORTHO05D005654 4.9e-192 675.2 643 52.3
THA.LOC104802608 Tarenaya hassleriana HOM05D004819 ORTHO05D005654 8.4e-192 674.5 649 50.7
Nitab4.5_0000931g0050 Nicotiana tabacum HOM05D004819 ORTHO05D005654 1.4e-191 673.7 642 52.3
MSTRG.10156 Avicennia marina HOM05D004819 ORTHO05D005654 1.9e-191 673.3 644 52.6
Gohir.A10G173100 Gossypium hirsutum HOM05D004819 ORTHO05D005654 1.9e-191 673.3 643 51.9
Manes.15G000800 Manihot esculenta HOM05D004819 ORTHO05D005654 1.9e-191 673.3 638 51.6
PGR004G0637 Punica granatum HOM05D004819 ORTHO05D005654 1.9e-191 673.3 645 50.9
Cc03_g00710 Coffea canephora HOM05D004819 ORTHO05D005654 7.1e-191 671.4 620 52.7
Migut.G00071 Erythranthe guttata HOM05D004819 ORTHO05D005654 9.3e-191 671.0 638 51.6
Oeu046577.1 Olea europaea HOM05D004819 ORTHO05D005654 4.6e-190 668.7 652 51.4
SGA_v2.0_scaffold104G30069 Striga asiatica HOM05D004819 ORTHO05D005654 7.9e-190 667.9 646 51.5
CANSAT78G1713 Cannabis sativa HOM05D004819 ORTHO05D005654 1.8e-189 666.8 639 51.6
Psat4g022840 Pisum sativum HOM05D004819 ORTHO05D005654 1.8e-189 666.8 650 51.2
Peaxi162Scf00228g00333 Petunia axillaris HOM05D004819 ORTHO05D005654 2.3e-189 666.4 638 51.7
CsaV3_3G015230 Cucumis sativus L. HOM05D004819 ORTHO05D005654 8.7e-189 664.5 643 52.6
ClCG05G006610 Citrullus lanatus HOM05D004819 ORTHO05D005654 4.3e-188 662.1 645 51.9
HanXRQChr11g0353871 Helianthus annuus HOM05D004819 ORTHO05D005654 7.4e-188 661.4 642 52.0
Lsat_1_v5_gn_1_41600 Lactuca sativa HOM05D004819 ORTHO05D005654 9.6e-188 661.0 620 52.9
Sed0001798 Sechium edule HOM05D004819 ORTHO05D005654 9.6e-188 661.0 623 52.8
COL.COLO4_34600 Corchorus olitorius HOM05D004819 ORTHO05D005654 2.1e-187 659.8 647 51.2
Lsat_1_v5_gn_6_1101 Lactuca sativa HOM05D004819 ORTHO05D005654 1.8e-186 656.8 649 50.4
Cpa.g.sc9.47 Carica papaya HOM05D004819 ORTHO05D005654 3.1e-186 656.0 638 51.4
Sed0007022 Sechium edule HOM05D004819 ORTHO05D005654 3.1e-186 656.0 624 52.1
ECA233G5711 Erigeron canadensis HOM05D004819 ORTHO05D005654 5.3e-186 655.2 635 51.3
Ah.05g176730 Amaranthus hybridus HOM05D004819 ORTHO05D005654 6.9e-186 654.8 587 54.9
CiPaw.01G137100 Carya illinoinensis HOM05D004819 ORTHO05D005654 1.2e-185 654.1 640 51.9
Sabra10G0113000 Salix brachista HOM05D004819 ORTHO05D005654 1.2e-185 654.1 658 50.3
Oeu052162.4 Olea europaea HOM05D004819 ORTHO05D005654 4.5e-185 652.1 687 49.3
AL7G38910 Arabidopsis lyrata HOM05D004819 ORTHO05D005654 6.5e-184 648.3 641 49.9
Carub.0007s2536 Capsella rubella HOM05D004819 ORTHO05D005654 8.4e-184 647.9 622 50.8
Thhalv10024420m.g Eutrema salsugineum HOM05D004819 ORTHO05D005654 5.5e-183 645.2 643 49.9
C01p26720 Brassica napus HOM05D004819 ORTHO05D005654 1.6e-182 643.7 641 49.6
Sp7g14690 Schrenkiella parvula HOM05D004819 ORTHO05D005654 2.1e-182 643.3 641 49.6
A03p49650 Brassica napus HOM05D004819 ORTHO05D005654 2.7e-182 642.9 643 49.9
AT4G16180 Arabidopsis thaliana HOM05D004819 ORTHO05D005654 3.5e-182 642.5 641 49.6
BcaC06g32994 Brassica carinata HOM05D004819 ORTHO05D005654 4.6e-182 642.1 641 49.6
A01p21370 Brassica napus HOM05D004819 ORTHO05D005654 1.8e-181 640.2 641 49.1
BcaC06g33458 Brassica carinata HOM05D004819 ORTHO05D005654 2.3e-181 639.8 643 49.5
BcaC09g50317 Brassica carinata HOM05D004819 ORTHO05D005654 2.3e-181 639.8 641 49.5
C07p47720 Brassica napus HOM05D004819 ORTHO05D005654 3.0e-181 639.4 643 49.5
ATR0693G033 Amborella trichopoda HOM05D004819 ORTHO05D005654 1.5e-180 637.1 789 43.9
BolC1t02613H Brassica oleracea HOM05D004819 ORTHO05D005654 1.5e-180 637.1 643 49.3
BraA01t02042Z Brassica rapa HOM05D004819 ORTHO05D005654 2.5e-180 636.3 645 48.8
BcaNung00215 Brassica carinata HOM05D004819 ORTHO05D005654 4.3e-180 635.6 643 48.8
CARHR222550 Cardamine hirsuta HOM05D004819 ORTHO05D005654 1.3e-179 634.0 623 49.9
BolC7t45297H Brassica oleracea HOM05D004819 ORTHO05D005654 6.3e-179 631.7 653 48.7
CDE02G0522 Ceratophyllum demersum HOM05D004819 ORTHO05D005654 6.3e-179 631.7 593 53.3
Aa31LG10G5910 Aethionema arabicum HOM05D004819 ORTHO05D005654 8.2e-179 631.3 668 47.9
BraA03t14064Z Brassica rapa HOM05D004819 ORTHO05D005654 8.2e-179 631.3 663 48.4
SMO298G0056 Selaginella moellendorffii HOM05D004819 ORTHO05D005654 1.8e-178 630.2 645 51.2
HanXRQChr02g0048601 Helianthus annuus HOM05D004819 ORTHO05D005654 1.2e-177 627.5 643 50.1
AUR62039265 Chenopodium quinoa HOM05D004819 ORTHO05D005654 9.3e-175 617.8 645 47.8
Haze_01312 Corylus avellana HOM05D004819 ORTHO05D005654 3.3e-172 609.4 685 47.6
MELO3C006720.2 Cucumis melo HOM05D004819 ORTHO05D005654 1.7e-168 597.0 642 48.6
Nn4g25546 Nelumbo nucifera HOM05D004819 ORTHO05D005654 4.5e-161 572.4 642 45.6
unitig_88.g27704 Utricularia gibba HOM05D002812 ORTHO05D005654 3.3e-156 556.2 634 47.5
TWI53G0610 Tripterygium wilfordii HOM05D004819 ORTHO05D005654 9.7e-156 554.7 593 48.2
vmacro08030 Vaccinium macrocarpon HOM05D004819 ORTHO05D005654 3.0e-149 533.1 548 49.5
CBR_g61507 Chara braunii HOM05D004819 ORTHO05D005654 8.8e-141 505.0 651 42.9
SHI00126 Sapria himalayana HOM05D004819 ORTHO05D005654 4.8e-139 499.2 521 48.4
MCO15G339 Micromonas commoda HOM05D004819 ORTHO05D005654 3.4e-92 343.6 687 33.2
GSVIVG01034917001 Vitis vinifera HOM05D004819 ORTHO05D005654 2.7e-89 334.0 588 36.7
Nitab4.5_0000177g0090 Nicotiana tabacum HOM05D004819 ORTHO05D005654 9.0e-85 318.9 358 46.1
Eucgr.H04185 Eucalyptus grandis HOM05D004819 ORTHO05D005654 5.6e-79 299.7 324 48.8
GSVIVG01034925001 Vitis vinifera HOM05D004819 ORTHO05D005654 1.7e-59 235.0 215 50.7
PRCOL_00001897 Prasinoderma coloniale HOM05D004819 ORTHO05D005654 7.4e-55 219.5 629 29.1
HPP92_005423 Vanilla planifolia HOM05D004819 ORTHO05D005654 5.3e-53 213.4 261 43.3
Cre10.g463300 Chlamydomonas reinhardtii HOM05D004819 ORTHO05D005654 1.3e-46 192.2 674 26.9
Os03g0310500 Oryza sativa ssp. japonica HOM05D004819 ORTHO05D005654 2.3e-40 171.4 145 58.6
Nn2g14956 Nelumbo nucifera HOM05D004819 ORTHO05D005654 3.9e-40 170.6 187 48.1
SHI00124 Sapria himalayana HOM05D004819 ORTHO05D005654 6.1e-33 146.7 218 39.9
Actinidia18457 Actinidia chinensis HOM05D004819 ORTHO05D005654 1.8e-32 145.2 230 38.7
SEGI_02776 Sequoiadendron giganteum HOM05D004819 ORTHO05D005654 1.8e-32 145.2 136 54.4
EL10Ac4g08939 Beta vulgaris HOM05D004819 ORTHO05D005654 3.6e-25 120.9 97 58.8
CSS0032110 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 4.4e-23 114.0 167 40.1
CSS0017759 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 2.2e-22 111.7 172 39.0
vmacro08031 Vaccinium macrocarpon HOM05D004819 ORTHO05D005654 2.4e-21 108.2 223 32.3
CAN.G244.3 Capsicum annuum HOM05D004819 ORTHO05D005654 1.0e-19 102.8 59 71.2
Zm00001eb339670 Zea mays HOM05D004819 ORTHO05D005654 1.1e-18 99.4 68 63.2
CSS0026249 Camellia sinensis var. sinensis HOM05D004819 ORTHO05D005654 3.3e-18 97.8 97 51.5
Rhsim05G0134500 Rhododendron simsii HOM05D004819 ORTHO05D005654 3.3e-18 97.8 189 35.4
GSVIVG01034928001 Vitis vinifera HOM05D004819 ORTHO05D005654 4.7e-17 94.0 57 68.4
HPP92_005425 Vanilla planifolia HOM05D004819 ORTHO05D005654 6.8e-16 90.1 110 41.8
ECA234G0649 Erigeron canadensis HOM05D004819 ORTHO05D005654 4.4e-15 87.4 108 45.4
PGSC0003DMG402014601 Solanum tuberosum HOM05D004819 ORTHO05D005654 9.8e-15 86.3 118 44.9
Pp3c6_13230 Physcomitrium patens HOM05D004819 ORTHO05D314092 2.0e-12 78.6 124 38.7
Psat0s3230g0160 Pisum sativum HOM05D004819 ORTHO05D005654 9.5e-10 69.7 61 55.7
Lsat_1_v5_gn_9_59160 Lactuca sativa HOM05D004819 ORTHO05D005654 4.7e-09 67.4 65 50.8
Pp3c3_25440 Physcomitrium patens HOM05D007118 ORTHO05D008957 8.0e-09 66.6 397 21.4
SMO244G0043 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 8.0e-09 66.6 426 20.4
SMO071G0001 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.4e-08 65.9 426 20.7
SEGI_30135 Sequoiadendron giganteum HOM05D004819 ORTHO05D005654 2.6e-07 61.6 92 42.4
Os06g0584200 Oryza sativa ssp. japonica HOM05D007118 ORTHO05D008957 1.3e-06 59.3 120 27.5
SMO244G0004 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.3e-06 59.3 125 25.6
SMO244G0083 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.3e-06 59.3 125 25.6
SMO244G0031 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.7e-06 58.9 125 28.8
SHI04174 Sapria himalayana HOM05D007118 ORTHO05D008957 4.9e-06 57.4 120 26.7
Mapoly0051s0046 Marchantia polymorpha HOM05D007118 ORTHO05D008957 6.4e-06 57.0 118 27.1


User provided reference genes

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