Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 0.0e+00 1310.8 657 100.0
Pp3c16_5950 Physcomitrium patens HOM05D043451 ORTHO05D004897 4.9e-224 781.6 399 99.0
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 9.3e-183 644.4 652 57.7
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 8.5e-128 461.8 551 52.3
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 1.8e-45 188.3 186 52.2
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 4.1e-45 187.2 285 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 4.5e-44 183.7 487 33.5
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 6.7e-40 169.9 199 48.2
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 3.7e-38 164.1 292 37.3
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 4.1e-37 160.6 299 34.4
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 6.9e-37 159.8 200 44.5
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 1.2e-36 159.1 202 43.6
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.2e-36 159.1 193 46.1
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 2.0e-36 158.3 192 43.8
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 1.7e-35 155.2 196 43.4
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 2.9e-35 154.5 198 44.9
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 3.8e-35 154.1 229 39.3
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 3.8e-35 154.1 244 39.3
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 5.0e-35 153.7 209 42.6
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 5.0e-35 153.7 199 45.2
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 5.0e-35 153.7 200 45.5
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 5.0e-35 153.7 198 46.0
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 5.0e-35 153.7 195 45.1
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 5.0e-35 153.7 196 45.9
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 8.5e-35 152.9 195 43.1
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.4e-34 152.1 208 41.3
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 1.4e-34 152.1 203 41.4
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 2.5e-34 151.4 197 41.6
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 4.2e-34 150.6 205 40.5
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 4.2e-34 150.6 199 43.2
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 4.2e-34 150.6 199 43.7
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 4.2e-34 150.6 199 43.7
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 5.5e-34 150.2 190 46.8
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 5.5e-34 150.2 213 41.3
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 1.2e-33 149.1 199 43.7
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 1.2e-33 149.1 262 37.8
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 2.7e-33 147.9 264 36.4
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 3.6e-33 147.5 192 44.8
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 4.7e-33 147.1 192 42.2
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 6.1e-33 146.7 196 42.3
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 7.9e-33 146.4 200 42.0
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 7.9e-33 146.4 239 39.3
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 7.9e-33 146.4 244 38.1
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 7.9e-33 146.4 197 41.1
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 1.4e-32 145.6 225 41.3
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 2.3e-32 144.8 286 37.8
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 2.3e-32 144.8 248 37.9
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 3.0e-32 144.4 234 39.3
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 3.9e-32 144.1 199 43.7
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 5.1e-32 143.7 221 41.6
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 6.7e-32 143.3 293 37.2
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 8.8e-32 142.9 272 37.9
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 8.8e-32 142.9 186 44.1
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 1.5e-31 142.1 192 42.7
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.5e-31 142.1 272 37.9
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 1.5e-31 142.1 286 35.7
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.6e-31 141.4 246 39.8
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.6e-31 141.4 197 40.6
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 3.3e-31 141.0 391 29.2
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.4e-31 140.6 268 38.1
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 4.4e-31 140.6 193 42.0
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 7.4e-31 139.8 197 41.6
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 9.7e-31 139.4 241 35.7
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 9.7e-31 139.4 279 38.0
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 1.7e-30 138.7 318 33.6
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 1.7e-30 138.7 244 38.5
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.7e-30 138.7 198 39.4
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 1.7e-30 138.7 198 41.4
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 2.2e-30 138.3 229 38.4
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 2.2e-30 138.3 311 33.4
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.8e-30 137.9 195 39.5
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 3.7e-30 137.5 198 39.4
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 3.7e-30 137.5 193 39.9
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 6.3e-30 136.7 194 40.7
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 1.4e-29 135.6 188 41.0
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 1.4e-29 135.6 193 39.9
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.4e-29 135.6 194 40.2
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 1.4e-29 135.6 205 40.0
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 3.1e-29 134.4 189 41.3
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 3.1e-29 134.4 233 36.1
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 4.1e-29 134.0 192 39.6
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 5.3e-29 133.7 192 40.1
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 7.0e-29 133.3 235 37.0
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 7.0e-29 133.3 184 41.8
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 7.0e-29 133.3 190 38.9
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 9.1e-29 132.9 189 41.3
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 9.1e-29 132.9 208 38.5
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.2e-28 132.5 201 39.8
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 2.6e-28 131.3 212 39.2
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 3.5e-28 131.0 185 39.5
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 7.7e-28 129.8 187 40.6
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.3e-27 129.0 187 42.2
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 1.7e-27 128.6 206 37.9
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 3.8e-27 127.5 204 38.7
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 5.0e-27 127.1 197 39.1
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 6.5e-27 126.7 239 35.6
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 6.5e-27 126.7 210 37.1
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 8.5e-27 126.3 250 33.6
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 1.9e-26 125.2 203 39.4
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.5e-26 124.8 187 42.2
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 4.2e-26 124.0 208 38.5
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 4.2e-26 124.0 208 38.5
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 4.2e-26 124.0 208 38.5
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 5.5e-26 123.6 460 28.9
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 7.2e-26 123.2 239 34.7
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 7.2e-26 123.2 198 39.9
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 9.4e-26 122.9 239 34.7
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 1.2e-25 122.5 240 34.6
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 2.1e-25 121.7 186 39.2
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 4.7e-25 120.6 239 34.3
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 1.4e-24 119.0 208 38.0
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 1.4e-24 119.0 208 38.0
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 1.4e-24 119.0 191 38.2
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 1.8e-24 118.6 204 38.7
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 3.0e-24 117.9 189 39.2
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 1.3e-22 112.5 176 42.0
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 2.2e-22 111.7 194 36.6
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 6.3e-22 110.2 355 29.3
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 8.2e-22 109.8 207 35.3
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 1.8e-21 108.6 192 34.9
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 2.4e-21 108.2 295 30.8
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 3.1e-21 107.8 204 36.3
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 4.1e-21 107.5 242 33.1
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 9.1e-21 106.3 237 32.1
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 2.0e-20 105.1 235 32.8
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 7.7e-20 103.2 201 34.8
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 1.3e-19 102.4 183 35.0
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 1.7e-19 102.1 204 32.8
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.7e-19 102.1 251 30.7
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 2.9e-19 101.3 231 31.6
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 6.5e-19 100.1 304 27.6
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 6.5e-19 100.1 304 27.6
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 8.5e-19 99.8 185 33.0
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.5e-18 99.0 121 46.3
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 7.2e-18 96.7 299 28.1
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 2.1e-17 95.1 382 28.0
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 6.1e-17 93.6 145 37.9
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 8.0e-17 93.2 182 31.9
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.0e-16 92.8 162 35.8
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 1.2e-15 89.4 135 41.5
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 1.1e-13 82.8 195 31.3
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 1.1e-13 82.8 103 43.7
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 1.9e-10 72.0 84 47.6
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 7.5e-07 60.1 68 47.1
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 6.3e-06 57.0 85 37.6


User provided reference genes

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