Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 3.3e-237 824.7 430 100.0
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 2.8e-111 406.4 347 60.2
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.9e-99 367.1 350 57.7
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 3.0e-97 359.8 313 58.1
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 7.4e-96 355.1 306 57.2
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 2.8e-95 353.2 334 53.6
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 1.8e-94 350.5 289 57.8
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 1.8e-94 350.5 302 57.3
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 5.3e-94 349.0 289 57.1
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 3.4e-93 346.3 326 53.7
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 4.5e-93 345.9 361 50.4
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 1.3e-92 344.4 298 55.7
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.7e-92 344.0 298 56.0
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 2.2e-92 343.6 303 56.4
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.1e-91 341.3 292 56.2
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.9e-91 340.5 327 51.7
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 3.2e-91 339.7 342 50.3
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 9.3e-91 338.2 287 56.4
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 9.3e-91 338.2 287 56.4
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 1.2e-90 337.8 304 53.3
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.6e-90 337.4 304 54.3
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 2.1e-90 337.0 298 55.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 2.1e-90 337.0 315 52.4
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 2.1e-90 337.0 304 54.6
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 2.7e-90 336.7 303 54.1
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 3.5e-90 336.3 304 54.6
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 3.5e-90 336.3 308 54.5
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 4.6e-90 335.9 303 56.4
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 4.6e-90 335.9 304 54.9
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 6.0e-90 335.5 291 55.7
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 6.0e-90 335.5 298 55.0
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 6.0e-90 335.5 307 54.7
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 7.9e-90 335.1 304 53.9
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 7.9e-90 335.1 295 55.6
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 7.9e-90 335.1 304 54.3
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 1.0e-89 334.7 339 50.4
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 1.0e-89 334.7 303 53.8
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.0e-89 334.7 303 53.8
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 1.3e-89 334.3 302 54.3
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 1.8e-89 334.0 298 54.4
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.8e-89 334.0 353 50.1
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.3e-89 333.6 302 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 3.9e-89 332.8 307 55.4
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 3.9e-89 332.8 293 55.3
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 5.1e-89 332.4 291 54.6
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 6.7e-89 332.0 299 54.5
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 1.9e-88 330.5 342 49.1
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 2.5e-88 330.1 304 53.0
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 3.3e-88 329.7 303 53.1
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 3.3e-88 329.7 305 53.1
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 4.3e-88 329.3 303 53.1
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 7.4e-88 328.6 346 49.4
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 7.4e-88 328.6 291 54.6
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 9.6e-88 328.2 291 54.3
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 9.6e-88 328.2 291 54.3
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 9.6e-88 328.2 291 54.3
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 9.6e-88 328.2 312 52.6
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 1.6e-87 327.4 298 53.4
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 3.7e-87 326.2 341 49.6
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 3.7e-87 326.2 305 54.1
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 4.8e-87 325.9 303 53.5
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 4.8e-87 325.9 287 54.7
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 4.8e-87 325.9 301 54.8
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 6.2e-87 325.5 304 53.0
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.1e-86 324.7 334 50.3
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 1.8e-86 323.9 318 51.9
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.8e-86 323.9 308 52.3
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 2.4e-86 323.6 297 54.5
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 3.1e-86 323.2 304 52.3
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 5.3e-86 322.4 273 57.1
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 6.9e-86 322.0 304 52.0
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 9.0e-86 321.6 291 53.6
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 1.5e-85 320.9 304 51.6
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 2.0e-85 320.5 302 52.3
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 2.0e-85 320.5 304 52.0
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 2.0e-85 320.5 291 53.3
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 4.5e-85 319.3 303 53.5
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 4.5e-85 319.3 301 52.8
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 1.7e-84 317.4 271 57.2
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 2.2e-84 317.0 303 53.5
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 6.5e-84 315.5 339 48.4
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 4.2e-83 312.8 266 57.1
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 7.1e-83 312.0 369 46.1
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 7.1e-83 312.0 291 52.9
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 1.0e-81 308.1 303 51.8
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 9.7e-80 301.6 273 53.8
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 1.6e-79 300.8 301 50.2
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 5.3e-78 295.8 251 57.8
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 5.0e-76 289.3 298 49.3
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 2.7e-74 283.5 252 55.6
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.5e-72 277.7 313 46.0
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.2e-71 273.9 304 47.7
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 8.2e-71 271.9 242 54.5
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.4e-70 270.4 301 47.5
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.4e-69 266.5 307 46.6
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 1.7e-68 264.2 254 52.8
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.1e-67 261.5 222 55.4
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 1.4e-67 261.2 298 46.6
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.4e-64 249.6 306 43.1
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 1.7e-63 247.7 234 52.1
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 2.4e-62 243.8 312 41.7
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 1.7e-60 237.7 201 58.2
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 1.4e-57 228.0 314 42.7
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 1.4e-57 228.0 187 58.3
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 6.7e-57 225.7 233 48.9
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.7e-55 221.1 271 41.7
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 3.7e-55 219.9 275 45.8
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.1e-54 216.9 228 50.0
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 2.0e-53 214.2 263 44.9
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 1.7e-52 211.1 238 46.6
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 2.2e-52 210.7 176 60.2
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 7.5e-48 195.7 237 45.6
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.2e-47 194.1 199 50.8
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.3e-44 184.9 134 69.4
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 2.2e-44 184.1 163 55.8
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 7.7e-37 159.1 262 40.5
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 1.1e-22 112.1 120 51.7
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.0e-20 105.5 98 53.1
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 8.6e-20 102.4 82 65.9
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.9e-19 101.3 232 31.5
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.6e-18 97.1 82 61.0
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 3.4e-16 90.5 221 34.8
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 2.2e-07 61.2 62 48.4


User provided reference genes

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