Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 4.8e-255 884.0 450 100.0
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.6e-226 789.3 448 88.4
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 4.1e-190 668.3 447 74.7
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 1.2e-184 650.2 432 74.5
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 4.4e-184 648.3 432 75.0
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 4.4e-184 648.3 434 74.4
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 1.3e-183 646.7 435 73.1
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 2.2e-183 646.0 432 73.6
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.9e-183 644.8 432 72.9
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 1.1e-182 643.7 432 74.5
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.1e-182 643.7 432 74.5
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.4e-182 643.3 432 73.6
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.4e-182 643.3 432 74.5
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 1.9e-182 642.9 432 74.1
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 2.4e-182 642.5 432 73.1
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 3.2e-182 642.1 432 73.1
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 3.2e-182 642.1 445 73.0
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 4.1e-182 641.7 435 73.1
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 5.4e-182 641.3 432 73.8
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 7.0e-182 641.0 432 73.1
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 9.2e-182 640.6 432 73.4
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 9.2e-182 640.6 432 74.1
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.2e-181 640.2 429 73.9
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.6e-181 639.8 432 73.6
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.6e-181 639.8 432 72.9
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 1.6e-181 639.8 433 74.4
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 2.0e-181 639.4 432 73.4
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 2.0e-181 639.4 432 73.1
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.7e-181 639.0 434 73.7
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 3.5e-181 638.6 432 72.2
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 4.6e-181 638.3 432 72.7
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.0e-180 637.1 432 73.8
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 1.3e-180 636.7 435 73.8
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.3e-180 636.7 434 73.0
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.3e-180 636.7 432 73.8
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 1.3e-180 636.7 432 72.2
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.7e-180 636.3 434 72.6
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 3.0e-180 635.6 432 73.1
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 3.0e-180 635.6 432 72.9
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.0e-180 635.6 432 72.9
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 3.9e-180 635.2 432 72.7
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 5.0e-180 634.8 432 73.1
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 6.6e-180 634.4 432 73.6
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 6.6e-180 634.4 432 72.5
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 6.6e-180 634.4 432 73.8
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 6.6e-180 634.4 432 72.5
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 8.6e-180 634.0 430 73.5
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 8.6e-180 634.0 432 72.7
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 8.6e-180 634.0 432 72.5
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.1e-179 633.6 442 71.3
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.1e-179 633.6 432 72.5
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.1e-179 633.6 437 72.1
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.5e-179 633.3 435 72.6
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 1.5e-179 633.3 436 71.8
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.9e-179 632.9 432 71.8
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.9e-179 632.9 432 72.2
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.9e-179 632.9 427 73.5
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.9e-179 632.9 432 72.2
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 3.3e-179 632.1 432 72.7
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 3.3e-179 632.1 432 73.1
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 5.6e-179 631.3 432 72.0
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 5.6e-179 631.3 432 73.4
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 5.6e-179 631.3 432 73.1
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 7.3e-179 630.9 465 68.4
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 7.3e-179 630.9 433 72.1
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.2e-178 630.2 458 70.1
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 2.1e-178 629.4 447 71.4
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 2.8e-178 629.0 433 71.4
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 2.8e-178 629.0 432 72.2
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 2.8e-178 629.0 432 72.9
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 3.6e-178 628.6 430 72.6
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 3.6e-178 628.6 432 72.7
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 3.6e-178 628.6 432 72.5
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 4.7e-178 628.2 430 72.8
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.7e-178 628.2 432 72.2
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.2e-178 627.9 439 71.1
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 6.2e-178 627.9 430 72.1
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 6.2e-178 627.9 432 72.7
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.1e-177 627.1 432 72.7
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.4e-177 626.7 429 72.3
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 2.3e-177 625.9 430 72.8
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.1e-177 625.5 432 71.5
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 5.2e-177 624.8 432 71.3
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.2e-177 624.8 428 71.5
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 6.8e-177 624.4 432 71.3
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 6.8e-177 624.4 433 71.1
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.2e-176 623.6 432 71.8
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.5e-176 623.2 432 70.8
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.5e-176 623.2 423 73.3
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 4.4e-176 621.7 434 70.7
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 5.8e-176 621.3 427 73.5
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.3e-175 620.2 432 70.8
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 1.3e-175 620.2 433 70.9
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-175 619.8 443 70.0
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-175 619.8 443 69.5
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 2.2e-175 619.4 430 72.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.9e-175 619.0 430 72.6
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 3.7e-175 618.6 432 70.6
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 3.7e-175 618.6 448 69.4
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 4.9e-175 618.2 432 70.4
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 4.9e-175 618.2 432 70.8
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 4.9e-175 618.2 432 70.8
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 4.9e-175 618.2 432 70.8
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 4.9e-175 618.2 432 70.8
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 6.4e-175 617.8 442 69.2
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 6.4e-175 617.8 430 71.9
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 8.3e-175 617.5 432 70.8
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 4.1e-174 615.1 432 70.6
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 4.1e-174 615.1 432 70.6
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 5.4e-174 614.8 432 70.6
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 9.2e-174 614.0 432 70.6
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.2e-173 613.6 432 70.4
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.1e-173 612.8 440 69.8
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 3.0e-172 609.0 446 69.3
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 6.6e-172 607.8 432 71.5
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 7.3e-171 604.4 432 71.1
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 2.8e-170 602.4 432 70.8
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 3.6e-170 602.1 438 69.4
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.3e-169 599.4 432 71.1
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.3e-169 599.4 430 70.0
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.4e-166 589.3 427 71.2
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 4.1e-166 588.6 407 71.7
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 7.1e-166 587.8 432 69.0
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 2.1e-162 576.2 438 67.8
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.2e-160 570.5 383 74.2
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.4e-153 546.2 432 64.6
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 6.9e-137 491.5 347 70.3
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 2.1e-130 469.9 486 55.1
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.4e-121 439.9 319 68.7
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 2.0e-120 436.8 316 69.6
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 6.5e-119 431.8 330 68.5
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.3e-116 423.3 434 52.3
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.2e-101 374.4 258 73.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.6e-101 374.0 258 72.5
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 6.1e-101 372.1 270 69.3
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 2.6e-99 366.7 299 63.9
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 3.1e-97 359.8 231 76.6
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.5e-78 297.7 397 46.9
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 7.5e-75 285.4 202 70.3
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 3.7e-74 283.1 202 71.3
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 4.3e-70 269.6 174 74.1
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 5.8e-67 259.2 173 72.8
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 6.0e-64 249.2 403 40.0
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.3e-63 247.3 289 46.7
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 8.6e-63 245.4 183 68.9
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 2.8e-61 240.4 219 58.9
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 1.7e-55 221.1 215 55.3
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 1.9e-54 217.6 215 55.3
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 3.3e-54 216.9 215 55.3
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 5.8e-51 206.1 212 52.8
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 2.1e-48 197.6 213 51.2
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 2.1e-48 197.6 118 78.8
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 4.7e-45 186.4 190 57.4
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.8e-42 176.8 115 73.9
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.6e-35 152.5 87 82.8
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 9.3e-33 145.6 83 81.9
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 3.1e-28 130.6 127 49.6
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 4.0e-20 103.6 67 76.1
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 5.8e-19 99.8 75 65.3
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.0e-18 99.0 155 38.7
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 7.1e-17 92.8 65 72.3
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.3e-15 88.6 116 46.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.8e-15 88.2 204 34.8
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 6.7e-15 86.3 56 76.8
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 2.1e-13 81.3 57 70.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 6.2e-13 79.7 126 42.9
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.2e-10 71.2 48 79.2
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 3.8e-10 70.5 49 67.3
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 3.8e-10 70.5 46 80.4
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 6.5e-10 69.7 80 45.0
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.9e-09 68.2 69 60.9
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 9.3e-09 65.9 43 72.1
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.3e-07 62.0 37 86.5
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 6.7e-07 59.7 31 83.9


User provided reference genes

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