Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 0.0e+00 2255.3 1160 100.0
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 7.4e-284 981.1 1169 49.6
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 7.7e-265 917.9 1145 48.0
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.6e-166 591.3 1107 35.1
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.0e-155 555.4 1128 35.4
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 1.7e-150 538.1 1142 33.5
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.4e-149 535.0 463 59.4
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 1.8e-149 534.6 1205 33.1
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 7.2e-146 522.7 1084 33.9
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.0e-144 518.8 1084 33.8
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 1.4e-144 518.5 1378 31.1
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.0e-143 514.6 1059 33.9
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 4.4e-143 513.5 1061 33.6
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.3e-142 511.9 1076 32.7
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 1.4e-141 508.4 1087 33.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.4e-141 507.7 1142 32.2
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 3.1e-141 507.3 1076 33.0
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 9.1e-141 505.8 1135 32.4
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 1.2e-140 505.4 1080 33.9
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 1.6e-140 505.0 1121 31.4
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 4.5e-140 503.4 1091 32.6
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 1.1e-138 498.8 1081 33.5
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 2.5e-138 497.7 1089 32.9
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.2e-137 495.4 1085 32.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.0e-136 492.3 1143 32.3
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 2.3e-136 491.1 1077 32.8
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 4.0e-136 490.3 1126 31.5
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 6.7e-136 489.6 1074 32.1
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 7.5e-135 486.1 1093 32.7
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 9.7e-135 485.7 1047 32.6
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 1.3e-134 485.3 1078 32.9
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 8.5e-131 472.6 461 51.4
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.1e-129 468.0 1077 32.2
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 2.3e-128 464.5 702 40.3
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 5.2e-128 463.4 715 38.6
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 6.8e-128 463.0 709 40.8
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.0e-127 461.5 1308 29.4
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 3.4e-127 460.7 706 37.7
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.7e-123 448.4 458 51.1
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 2.3e-120 438.0 1022 30.7
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 4.0e-120 437.2 462 48.5
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 7.5e-119 433.0 705 37.7
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.8e-118 431.0 462 50.0
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.8e-118 431.0 462 50.0
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.6e-116 425.2 458 48.0
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 2.7e-116 424.5 468 47.2
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 7.8e-116 422.9 462 47.8
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.3e-115 422.2 456 47.6
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 3.8e-115 420.6 455 46.6
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 5.0e-115 420.2 455 47.7
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 6.6e-115 419.9 708 35.6
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 8.6e-115 419.5 456 47.4
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.3e-114 417.5 480 45.6
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 4.7e-113 413.7 462 47.4
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 6.1e-113 413.3 462 46.1
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 8.0e-113 412.9 458 46.9
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.8e-112 411.8 456 46.3
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 8.9e-112 409.5 453 44.6
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.2e-111 409.1 456 45.2
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 2.0e-111 408.3 458 45.2
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 3.4e-111 407.5 456 45.0
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 3.4e-111 407.5 453 44.2
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 7.5e-111 406.4 453 45.0
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.3e-110 405.6 453 44.2
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.2e-110 404.8 874 32.3
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 4.9e-110 403.7 484 45.0
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 4.1e-109 400.6 465 44.9
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 9.2e-109 399.4 460 44.8
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 4.6e-108 397.1 456 46.7
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.0e-107 396.0 470 44.3
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.3e-107 395.6 459 44.7
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 2.3e-107 394.8 462 43.9
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 2.5e-106 391.3 462 43.9
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 3.3e-106 391.0 463 44.5
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 4.3e-106 390.6 459 44.9
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 8.0e-105 386.3 712 36.2
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 8.3e-102 376.3 388 49.7
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.6e-100 372.1 345 51.6
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 2.7e-100 371.3 338 53.0
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 6.0e-100 370.2 449 42.5
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.0e-99 369.4 455 44.6
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 8.6e-99 366.3 354 50.3
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 5.6e-98 363.6 297 57.6
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 8.1e-97 359.8 465 41.9
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 4.0e-96 357.5 460 42.8
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 2.0e-95 355.1 466 42.3
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 5.8e-95 353.6 369 46.9
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.3e-94 352.4 457 41.8
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 4.9e-94 350.5 468 40.4
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 6.4e-94 350.1 459 41.4
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 1.4e-93 349.0 450 40.9
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 5.4e-93 347.1 450 40.7
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 3.5e-92 344.4 457 41.8
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 5.1e-91 340.5 450 40.2
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 1.1e-90 339.3 450 40.0
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 1.5e-90 339.0 460 41.7
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 2.5e-90 338.2 460 42.0
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.1e-89 335.1 459 40.3
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 9.6e-82 309.7 368 42.1
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.5e-79 302.4 350 45.4
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 4.2e-77 294.3 463 37.6
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 4.2e-77 294.3 463 37.6
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 5.4e-77 293.9 458 37.6
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 3.6e-73 281.2 592 33.8
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.3e-70 272.7 822 27.7
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 4.9e-70 270.8 331 41.7
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 4.6e-68 264.2 698 29.2
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.3e-67 262.7 364 40.9
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 3.9e-67 261.2 209 56.9
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 3.2e-61 241.5 258 45.7
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 4.8e-57 227.6 369 37.9
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.2e-52 213.0 168 56.0
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.1e-40 173.3 288 34.4
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.8e-38 164.9 280 39.6
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 3.3e-34 151.8 117 53.0
Pp3c27_4860 Physcomitrium patens HOM05D002030 ORTHO05D007413 5.7e-34 151.0 173 53.2
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 4.2e-29 134.8 191 39.3
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 1.6e-28 132.9 243 35.8
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 7.7e-23 114.0 200 38.0
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 1.7e-22 112.8 213 34.7
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 8.0e-20 104.0 180 37.2
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 5.7e-18 97.8 64 64.1
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 3.1e-16 92.0 136 38.2
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 1.2e-12 80.1 149 34.2
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.1e-12 79.3 86 40.7
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 1.3e-09 70.1 78 43.6
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 3.8e-06 58.5 306 23.9


User provided reference genes

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