Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 0.0e+00 1138.6 614 100.0
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 5.4e-116 422.5 518 45.6
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.7e-114 417.5 438 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 4.7e-104 382.9 662 43.5
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.4e-95 354.8 414 43.7
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.1e-92 345.1 648 35.6
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 3.2e-92 343.6 449 42.5
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 4.1e-92 343.2 443 42.0
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 9.2e-92 342.0 444 42.8
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 6.0e-91 339.3 447 42.5
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 6.0e-91 339.3 419 42.5
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.7e-90 337.8 441 42.0
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 3.9e-90 336.7 505 40.8
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.5e-89 334.7 434 43.3
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.5e-89 334.0 508 37.8
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 5.6e-89 332.8 535 39.1
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.2e-88 331.6 453 40.6
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.6e-88 331.3 417 41.5
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.8e-88 330.5 622 36.0
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 3.6e-88 330.1 437 40.3
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.6e-88 330.1 440 40.2
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 3.6e-88 330.1 444 40.5
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 4.7e-88 329.7 450 40.4
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 8.1e-88 328.9 459 38.3
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 8.1e-88 328.9 478 38.9
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.4e-87 328.2 459 39.2
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.8e-87 327.8 416 40.6
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.8e-87 327.8 468 40.2
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-87 327.4 454 40.5
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 2.3e-87 327.4 419 42.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.8e-87 325.9 419 42.0
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.0e-86 324.3 438 39.7
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.6e-86 323.9 535 38.5
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 4.4e-86 323.2 426 40.1
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 5.8e-86 322.8 441 40.6
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 5.8e-86 322.8 452 39.6
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 9.9e-86 322.0 476 38.9
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.7e-85 321.2 413 40.7
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.2e-85 320.9 437 39.1
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 2.2e-85 320.9 436 39.7
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.9e-85 320.5 508 37.2
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 4.9e-85 319.7 431 41.5
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 8.3e-85 318.9 436 39.0
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.9e-84 317.8 453 39.3
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 3.2e-84 317.0 456 38.4
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 3.2e-84 317.0 446 37.9
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.1e-84 316.6 438 40.2
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 4.1e-84 316.6 481 37.0
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 5.4e-84 316.2 434 39.6
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.6e-83 314.7 449 40.3
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 2.7e-83 313.9 440 38.6
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.7e-83 313.9 439 39.0
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 3.5e-83 313.5 470 37.9
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 4.6e-83 313.2 470 37.7
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 6.0e-83 312.8 440 40.0
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 6.0e-83 312.8 415 40.7
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 7.8e-83 312.4 476 37.2
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 1.0e-82 312.0 414 40.3
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.3e-82 311.6 443 40.0
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 3.9e-82 310.1 441 40.8
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 5.1e-82 309.7 482 37.3
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 8.6e-82 308.9 472 37.5
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 8.6e-82 308.9 452 40.5
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.1e-81 308.5 446 38.3
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.5e-81 308.1 472 36.7
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.9e-81 307.8 434 38.2
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 2.5e-81 307.4 438 38.1
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 4.3e-81 306.6 442 38.5
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 5.6e-81 306.2 472 37.1
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 7.3e-81 305.8 445 40.4
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.2e-80 305.1 414 41.1
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 2.1e-80 304.3 461 37.5
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 2.1e-80 304.3 496 37.3
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 4.7e-80 303.1 519 35.1
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 1.4e-79 301.6 434 37.8
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 1.8e-79 301.2 416 38.7
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.0e-78 297.7 448 38.8
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 2.6e-78 297.4 512 35.9
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.6e-78 297.4 512 35.9
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 4.4e-78 296.6 448 36.4
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 4.4e-78 296.6 680 32.1
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 7.6e-78 295.8 461 37.5
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 7.6e-78 295.8 462 38.5
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 7.6e-78 295.8 462 38.5
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.7e-77 294.7 433 37.9
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.2e-77 294.3 490 35.7
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 3.8e-77 293.5 473 36.2
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 1.1e-76 292.0 486 36.2
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.4e-76 290.8 641 32.8
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 4.2e-76 290.0 433 35.8
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.2e-75 288.5 461 36.7
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 2.7e-75 287.3 420 38.8
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.0e-75 286.2 534 32.6
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 3.9e-74 283.5 447 35.3
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.5e-73 280.8 435 35.9
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.3e-72 278.5 464 35.6
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.8e-71 274.6 426 38.0
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 2.2e-69 267.7 501 35.9
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 2.9e-69 267.3 726 30.9
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 8.4e-69 265.8 428 36.0
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 7.1e-68 262.7 456 34.9
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 3.6e-64 250.4 499 32.3
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 4.0e-63 246.9 347 42.4
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 9.0e-63 245.7 415 35.4
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 9.0e-63 245.7 474 33.3
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 2.4e-60 237.7 357 38.4
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 9.3e-60 235.7 328 39.9
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.5e-59 233.8 458 34.3
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.0e-58 232.3 507 31.8
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-57 228.8 355 37.2
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.4e-55 221.9 350 34.9
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 6.9e-55 219.5 472 32.2
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 7.9e-43 179.5 303 35.6
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 9.7e-41 172.6 278 33.1
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.6e-40 171.8 240 41.2
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.2e-40 171.4 268 39.9
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 2.8e-40 171.0 233 39.9
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.4e-39 167.9 243 41.2
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 6.9e-39 166.4 631 23.6
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.5e-38 165.2 223 44.4
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.0e-38 164.9 193 40.4
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.4e-38 164.1 224 42.0
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.3e-37 162.2 216 39.8
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-36 159.1 293 36.5
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 1.6e-35 155.2 204 45.1
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.6e-35 155.2 283 32.9
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.0e-34 152.5 292 31.2
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 4.3e-33 147.1 227 36.1
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 4.8e-32 143.7 135 48.1
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 6.9e-31 139.8 213 37.1
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.3e-29 135.6 136 51.5
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.5e-28 131.3 184 44.6
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.9e-26 124.0 170 37.6
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 8.8e-26 122.9 147 44.2
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 9.7e-25 119.4 305 28.5
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 9.7e-25 119.4 181 40.9
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 7.0e-23 113.2 189 36.0
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.5e-21 106.7 165 39.4
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.5e-21 106.3 183 37.7
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.4e-20 102.8 183 34.4
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 9.4e-20 102.8 183 37.2
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 2.1e-19 101.7 190 31.1
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 6.1e-19 100.1 309 27.5
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.2e-18 97.1 183 35.0
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.2e-18 97.1 183 35.0
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.2e-18 97.1 183 35.0
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.1e-17 95.9 168 33.9
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 2.6e-17 94.7 129 41.1
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 9.7e-17 92.8 103 46.6
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 1.3e-16 92.4 124 40.3
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 2.2e-16 91.7 92 44.6
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.8e-16 90.5 72 56.9
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-15 89.4 106 42.5
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.8e-15 88.6 229 31.0
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 2.7e-14 84.7 99 41.4
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 3.5e-14 84.3 110 39.1
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.0e-13 80.5 75 53.3
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 4.2e-12 77.4 73 39.7
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 8.0e-11 73.2 100 43.0
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-10 72.0 100 38.0
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 8.8e-10 69.7 69 46.4
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.7e-08 65.5 86 38.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.4e-07 62.4 456 22.1


User provided reference genes

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