Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_3160 Physcomitrium patens HOM05D006614 ORTHO05D008217 0.0e+00 1187.9 643 100.0
AagrBONN_evm.TU.Sc2ySwM_228.5094 Anthoceros agrestis HOM05D006614 ORTHO05D008217 1.6e-54 218.4 257 43.6
SEGI_22211 Sequoiadendron giganteum HOM05D006614 ORTHO05D008217 8.8e-53 212.6 420 33.3
vmacro23466 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 1.5e-52 211.8 440 34.3
MBI12_g10753_MAGBIO Magnolia biondii HOM05D006614 ORTHO05D008217 2.0e-52 211.5 444 32.4
COL.COLO4_17543 Corchorus olitorius HOM05D006614 ORTHO05D008217 7.5e-52 209.5 542 35.6
HanXRQChr15g0476201 Helianthus annuus HOM05D006614 ORTHO05D008217 1.7e-51 208.4 550 34.2
Cfa019566 Carpinus fangiana HOM05D006614 ORTHO05D008217 2.8e-51 207.6 455 39.1
Gorai.001G269000 Gossypium raimondii HOM05D006614 ORTHO05D008217 6.3e-51 206.5 545 36.0
Rhsim06G0208100 Rhododendron simsii HOM05D006614 ORTHO05D008217 6.3e-51 206.5 436 36.9
MSTRG.6677 Avicennia marina HOM05D006614 ORTHO05D008217 1.1e-50 205.7 452 37.2
Actinidia12578 Actinidia chinensis HOM05D006614 ORTHO05D008217 1.4e-50 205.3 548 30.7
Hma1.2p1_0290F.1_g114830 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 1.4e-50 205.3 431 36.0
Cpa.g.sc77.8 Carica papaya HOM05D006614 ORTHO05D008217 2.4e-50 204.5 531 32.8
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 2.4e-50 204.5 563 31.1
Mapoly0097s0086 Marchantia polymorpha HOM05D006614 ORTHO05D008217 5.4e-50 203.4 236 41.9
CsaV3_4G033120 Cucumis sativus L. HOM05D006614 ORTHO05D008217 7.0e-50 203.0 531 33.5
ClCG11G017450 Citrullus lanatus HOM05D006614 ORTHO05D008217 1.2e-49 202.2 535 35.7
Sopen07g030680 Solanum pennellii HOM05D006614 ORTHO05D008217 1.2e-49 202.2 437 35.9
Duzib213G0629 Durio zibethinus HOM05D006614 ORTHO05D008217 1.6e-49 201.8 530 37.0
Gohir.D07G233600 Gossypium hirsutum HOM05D006614 ORTHO05D008217 1.6e-49 201.8 549 35.3
Migut.M00728 Erythranthe guttata HOM05D006614 ORTHO05D008217 2.7e-49 201.1 542 32.5
CDE12G0873 Ceratophyllum demersum HOM05D006614 ORTHO05D008217 3.5e-49 200.7 557 31.1
Gohir.A07G226400 Gossypium hirsutum HOM05D006614 ORTHO05D008217 3.5e-49 200.7 547 35.5
Solyc07g062440.1 Solanum lycopersicum HOM05D006614 ORTHO05D008217 3.5e-49 200.7 437 35.9
Haze_09323 Corylus avellana HOM05D006614 ORTHO05D008217 4.5e-49 200.3 458 38.2
MELO3C025640.2 Cucumis melo HOM05D006614 ORTHO05D008217 4.5e-49 200.3 531 34.8
Potri.001G390600 Populus trichocarpa HOM05D006614 ORTHO05D008217 4.5e-49 200.3 445 36.0
PGSC0003DMG400046940 Solanum tuberosum HOM05D006614 ORTHO05D008217 5.9e-49 199.9 439 35.1
CSS0027020 Camellia sinensis var. sinensis HOM05D006614 ORTHO05D008217 7.7e-49 199.5 547 34.9
SalBow5G0223 Salvia bowleyana HOM05D006614 ORTHO05D008217 1.0e-48 199.1 432 31.7
Sc16g0007600 Simmondsia chinensis HOM05D006614 ORTHO05D008217 1.0e-48 199.1 441 37.4
TWI38G0322 Tripterygium wilfordii HOM05D006614 ORTHO05D008217 1.0e-48 199.1 546 36.4
CiPaw.11G160300 Carya illinoinensis HOM05D006614 ORTHO05D008217 1.3e-48 198.7 394 34.5
Sed0001562 Sechium edule HOM05D006614 ORTHO05D008217 1.3e-48 198.7 540 33.3
PGR142G0467 Punica granatum HOM05D006614 ORTHO05D008217 2.2e-48 198.0 530 34.3
GSVIVG01014198001 Vitis vinifera HOM05D006614 ORTHO05D008217 2.2e-48 198.0 515 29.1
Manes.15G094800 Manihot esculenta HOM05D006614 ORTHO05D008217 2.9e-48 197.6 567 28.7
SGA_v2.0_scaffold34G13782 Striga asiatica HOM05D006614 ORTHO05D008217 2.9e-48 197.6 281 40.2
Thecc.07G117000 Theobroma cacao HOM05D006614 ORTHO05D008217 3.8e-48 197.2 538 35.7
Sabra16G0256000 Salix brachista HOM05D006614 ORTHO05D008217 5.0e-48 196.8 271 38.0
Peaxi162Scf00111g01423 Petunia axillaris HOM05D006614 ORTHO05D008217 6.5e-48 196.4 572 29.2
unitig_747.g21586 Utricularia gibba HOM05D006614 ORTHO05D008217 6.5e-48 196.4 566 29.9
Lj1P829T27 Lonicera japonica HOM05D006614 ORTHO05D008217 8.5e-48 196.1 549 34.8
CAN.G375.15 Capsicum annuum HOM05D006614 ORTHO05D008217 1.1e-47 195.7 441 33.1
AUR62021467 Chenopodium quinoa HOM05D006614 ORTHO05D008217 1.5e-47 195.3 418 32.1
Hma1.2p1_0290F.1_g114840 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 1.9e-47 194.9 280 38.9
SMO356G0760 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 1.9e-47 194.9 270 39.6
TAR375G0652 Trochodendron aralioides HOM05D006614 ORTHO05D008217 3.2e-47 194.1 380 33.2
Atru.chr2.2145 Acer truncatum HOM05D006614 ORTHO05D008217 4.2e-47 193.7 450 32.0
ECA240G1555 Erigeron canadensis HOM05D006614 ORTHO05D008217 5.5e-47 193.4 284 38.0
Nitab4.5_0006953g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 5.5e-47 193.4 567 29.5
Oeu061358.1 Olea europaea HOM05D006614 ORTHO05D008217 7.2e-47 193.0 439 32.6
ATR0810G004 Amborella trichopoda HOM05D006614 ORTHO05D008217 9.5e-47 192.6 455 34.1
AUR62010952 Chenopodium quinoa HOM05D006614 ORTHO05D008217 1.2e-46 192.2 503 30.0
VMungo0647G0674 Vigna mungo HOM05D006614 ORTHO05D008217 2.1e-46 191.4 464 34.5
A05p34510 Brassica napus HOM05D006614 ORTHO05D008217 2.7e-46 191.0 547 31.3
BraA05t22271Z Brassica rapa HOM05D006614 ORTHO05D008217 2.7e-46 191.0 547 31.3
Phvul.008G231100 Phaseolus vulgaris HOM05D006614 ORTHO05D008217 3.6e-46 190.7 468 33.8
arahy.Tifrunner.gnm1.ann1.UH0U35 Arachis hypogaea HOM05D006614 ORTHO05D008217 4.7e-46 190.3 382 34.6
C05p52250 Brassica napus HOM05D006614 ORTHO05D008217 6.1e-46 189.9 550 31.5
SMO356G0609 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 6.1e-46 189.9 269 39.4
EL10Ac8g18445 Beta vulgaris HOM05D006614 ORTHO05D008217 8.0e-46 189.5 465 34.2
Cc05_g11080 Coffea canephora HOM05D006614 ORTHO05D008217 8.0e-46 189.5 447 34.9
Ah.09g230960 Amaranthus hybridus HOM05D006614 ORTHO05D008217 1.0e-45 189.1 470 34.5
BcaB06g29517 Brassica carinata HOM05D006614 ORTHO05D008217 1.0e-45 189.1 447 33.3
FvH4_3g18290 Fragaria vesca HOM05D006614 ORTHO05D008217 1.0e-45 189.1 450 31.8
Thecc.07G116400 Theobroma cacao HOM05D006614 ORTHO05D008217 1.0e-45 189.1 439 38.7
Nitab4.5_0003565g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 1.4e-45 188.7 582 28.5
Aqoxy1G00012 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 1.8e-45 188.3 451 36.1
BcaB06g25331 Brassica carinata HOM05D006614 ORTHO05D008217 2.3e-45 188.0 552 34.1
RcHm_v2.0_Chr5g0030921 Rosa chinensis HOM05D006614 ORTHO05D008217 2.3e-45 188.0 343 35.6
Sp3g13110 Schrenkiella parvula HOM05D006614 ORTHO05D008217 2.3e-45 188.0 552 30.4
BolC5t33914H Brassica oleracea HOM05D006614 ORTHO05D008217 3.0e-45 187.6 556 33.1
arahy.Tifrunner.gnm1.ann1.087IU6 Arachis hypogaea HOM05D006614 ORTHO05D008217 4.0e-45 187.2 380 33.9
CARHR089840 Cardamine hirsuta HOM05D006614 ORTHO05D008217 4.0e-45 187.2 459 33.1
DCAR_021025 Daucus carota HOM05D006614 ORTHO05D008217 5.2e-45 186.8 555 29.9
FAN16G2994 Fragaria x ananassa HOM05D006614 ORTHO05D008217 5.2e-45 186.8 447 31.1
Glyma.14G066300 Glycine max HOM05D006614 ORTHO05D008217 6.8e-45 186.4 562 32.0
vmacro11940 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 6.8e-45 186.4 281 38.4
MD03G1243600 Malus domestica HOM05D006614 ORTHO05D008217 8.8e-45 186.0 378 33.6
Lalb_Chr17g0346371 Lupinus albus HOM05D006614 ORTHO05D008217 1.2e-44 185.7 458 31.7
FAN11G1715 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.5e-44 185.3 446 31.4
HPP92_015867 Vanilla planifolia HOM05D006614 ORTHO05D008217 2.0e-44 184.9 291 36.8
AL3G27220 Arabidopsis lyrata HOM05D006614 ORTHO05D008217 2.6e-44 184.5 448 35.9
Thhalv10022322m.g Eutrema salsugineum HOM05D006614 ORTHO05D008217 3.4e-44 184.1 547 30.5
Prupe.4G164700 Prunus persica HOM05D006614 ORTHO05D008217 4.4e-44 183.7 278 37.8
LjContig00141g0022614 Lotus japonicus HOM05D006614 ORTHO05D008217 7.5e-44 183.0 572 29.4
QL12p002313 Quercus lobata HOM05D006614 ORTHO05D008217 7.5e-44 183.0 463 38.2
THA.LOC104822565 Tarenaya hassleriana HOM05D006614 ORTHO05D008217 7.5e-44 183.0 569 30.9
Medtr5g080700 Medicago truncatula HOM05D006614 ORTHO05D008217 9.8e-44 182.6 463 30.9
Zm00001eb078480 Zea mays HOM05D006614 ORTHO05D008217 9.8e-44 182.6 588 27.6
Ca_05900_v3 Cicer arietinum L. HOM05D006614 ORTHO05D008217 1.3e-43 182.2 562 31.1
PSO063G1163 Papaver somniferum HOM05D006614 ORTHO05D008217 1.7e-43 181.8 540 31.5
PSO421G0295 Papaver somniferum HOM05D006614 ORTHO05D008217 2.2e-43 181.4 538 30.9
Aa31LG8G2110 Aethionema arabicum HOM05D006614 ORTHO05D008217 2.8e-43 181.0 555 34.2
Carub.0003s1456 Capsella rubella HOM05D006614 ORTHO05D008217 3.7e-43 180.6 616 29.5
Psat2g179000 Pisum sativum HOM05D006614 ORTHO05D008217 8.3e-43 179.5 572 30.1
TPR.G25839 Trifolium pratense HOM05D006614 ORTHO05D008217 1.1e-42 179.1 553 30.4
Eucgr.K01881 Eucalyptus grandis HOM05D006614 ORTHO05D008217 2.4e-42 177.9 177 49.2
CANSAT35G1108 Cannabis sativa HOM05D006614 ORTHO05D008217 7.0e-42 176.4 566 34.3
AT3G14900 Arabidopsis thaliana HOM05D006614 ORTHO05D008217 4.5e-41 173.7 577 31.2
Os04g0497900 Oryza sativa ssp. japonica HOM05D006614 ORTHO05D008217 4.5e-41 173.7 336 33.9
Psat0s3066g0080 Pisum sativum HOM05D006614 ORTHO05D008217 1.4e-34 152.1 384 30.2
Aqoxy3G00116 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 1.5e-31 142.1 240 36.7
FAN25G0567 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.5e-28 132.1 240 32.9
CBR_g47994 Chara braunii HOM05D006614 ORTHO05D008217 1.0e-24 119.4 283 29.0
Ciclev10023881m.g Citrus clementina HOM05D006614 ORTHO05D008217 2.6e-20 104.8 310 32.3
Glyma.02G250300 Glycine max HOM05D006614 ORTHO05D008217 1.6e-14 85.5 158 33.5
Pp3c19_19090 Physcomitrium patens HOM05D000415 ORTHO05D002707 8.9e-13 79.7 119 38.7
HPP92_015860 Vanilla planifolia HOM05D006614 ORTHO05D008217 2.7e-09 68.2 49 59.2
MD11G1263800 Malus domestica HOM05D006614 ORTHO05D008217 4.3e-07 60.8 75 42.7


User provided reference genes

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