Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.0e-102 375.2 189 100.0
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 4.3e-40 168.7 126 62.7
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.6e-39 165.6 183 45.9
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 3.6e-39 165.6 144 54.2
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.7e-39 165.2 183 45.9
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.7e-39 165.2 125 58.4
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 8.1e-39 164.5 186 45.7
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 8.1e-39 164.5 125 57.6
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.1e-38 164.1 125 57.6
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.1e-38 164.1 125 57.6
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.4e-38 163.7 148 52.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.8e-38 163.3 125 58.4
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.8e-38 163.3 124 58.1
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.4e-38 162.9 125 59.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.1e-38 162.5 150 51.3
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 4.0e-38 162.2 125 56.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.0e-38 162.2 125 56.8
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 4.0e-38 162.2 146 50.7
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 5.3e-38 161.8 138 54.3
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 5.3e-38 161.8 125 58.4
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.2e-37 160.6 148 49.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.5e-37 160.2 184 47.8
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.5e-37 160.2 125 56.0
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.5e-37 160.2 125 56.8
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.5e-37 160.2 125 57.6
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.5e-37 160.2 125 57.6
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.0e-37 159.8 143 52.4
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.0e-37 159.8 125 56.8
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.0e-37 159.8 125 57.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 4.4e-37 158.7 188 44.7
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 4.4e-37 158.7 125 56.8
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 4.4e-37 158.7 125 56.0
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 4.4e-37 158.7 138 53.6
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 4.4e-37 158.7 168 45.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 5.8e-37 158.3 129 55.0
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 7.6e-37 157.9 145 51.7
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 9.9e-37 157.5 125 54.4
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 9.9e-37 157.5 191 44.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 9.9e-37 157.5 125 56.8
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.7e-36 156.8 125 56.0
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.2e-36 156.4 163 45.4
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.2e-36 156.4 191 44.5
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.2e-36 156.4 190 45.3
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 2.2e-36 156.4 125 55.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.2e-36 156.4 147 48.3
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.9e-36 156.0 184 45.1
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 2.9e-36 156.0 125 54.4
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.9e-36 156.0 125 55.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.8e-36 155.6 125 56.8
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 4.9e-36 155.2 158 48.7
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 4.9e-36 155.2 146 50.7
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.9e-36 155.2 125 56.0
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 6.4e-36 154.8 189 45.5
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 8.4e-36 154.5 186 45.7
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 8.4e-36 154.5 193 44.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.1e-35 154.1 124 55.6
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.1e-35 154.1 125 53.6
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.1e-35 154.1 125 54.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.4e-35 153.7 125 53.6
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.9e-35 153.3 125 54.4
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.9e-35 153.3 125 55.2
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 3.2e-35 152.5 172 45.9
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.2e-35 152.5 124 54.0
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 5.4e-35 151.8 125 53.6
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.1e-35 151.4 125 54.4
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 7.1e-35 151.4 125 55.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 9.3e-35 151.0 187 45.5
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 9.3e-35 151.0 125 54.4
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 9.3e-35 151.0 125 52.8
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.2e-34 150.6 125 53.6
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.2e-34 150.6 125 54.4
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.6e-34 150.2 189 42.9
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.6e-34 150.2 125 53.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.6e-34 150.2 172 43.6
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.1e-34 149.8 125 52.8
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.1e-34 149.8 182 44.5
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.7e-34 149.4 124 53.2
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 3.5e-34 149.1 125 54.4
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 3.5e-34 149.1 121 57.0
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 4.6e-34 148.7 125 52.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 7.8e-34 147.9 125 52.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 7.8e-34 147.9 124 53.2
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.0e-33 147.5 174 44.8
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.0e-33 147.5 191 42.4
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.3e-33 147.1 124 58.1
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-33 147.1 191 44.0
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.7e-33 146.7 184 42.4
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.3e-33 146.4 143 48.3
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.3e-33 146.4 132 49.2
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.9e-33 145.6 125 51.2
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.9e-33 145.6 125 51.2
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.9e-33 145.6 169 46.2
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 5.1e-33 145.2 124 50.8
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 5.1e-33 145.2 124 50.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 5.1e-33 145.2 191 42.9
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.1e-32 144.1 125 50.4
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.5e-32 143.7 182 40.7
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.5e-32 143.7 195 42.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.5e-32 143.7 126 51.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 4.3e-32 142.1 126 53.2
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 5.6e-32 141.7 117 53.8
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 9.6e-32 141.0 125 48.8
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 9.6e-32 141.0 125 49.6
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.3e-31 140.6 126 50.0
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.3e-31 140.6 125 48.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.6e-31 140.2 192 41.1
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.6e-31 140.2 125 48.8
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.1e-31 139.8 125 48.8
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.1e-31 139.8 155 44.5
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.8e-31 139.4 124 49.2
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.8e-31 138.7 148 45.9
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.2e-31 138.3 166 42.2
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.5e-29 133.7 132 46.2
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.6e-29 132.9 188 38.8
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 5.8e-29 131.7 147 43.5
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 7.6e-29 131.3 125 48.0
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 7.6e-29 131.3 113 54.9
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.2e-28 129.8 114 50.0
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.2e-28 129.8 173 39.3
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 2.9e-28 129.4 119 49.6
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 4.9e-28 128.6 161 42.2
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.1e-27 127.5 112 47.3
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.1e-27 127.5 116 50.0
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.4e-27 125.2 164 42.1
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.1e-27 124.8 99 53.5
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 7.1e-27 124.8 212 34.9
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.2e-26 124.0 110 50.0
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 4.5e-21 105.5 110 46.4
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.8e-20 102.4 175 34.3
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.9e-20 102.1 87 54.0
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.2e-18 97.4 98 45.9
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 6.0e-18 95.1 72 56.9
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.0e-17 94.4 77 54.5
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.3e-17 94.0 103 39.8
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.8e-17 93.6 76 51.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.1e-15 86.7 76 52.6
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.8e-14 83.6 68 54.4
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 6.9e-14 81.6 72 50.0
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 2.2e-12 76.6 56 58.9
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.6e-10 70.5 52 53.8
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 4.6e-10 68.9 64 48.4
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 3.1e-06 56.2 52 46.2


User provided reference genes

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