Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 5.3e-276 953.7 486 100.0
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.1e-95 354.8 566 40.1
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 7.8e-94 348.6 497 43.1
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.3e-93 347.1 419 47.3
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 5.6e-92 342.4 473 43.8
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 7.3e-92 342.0 417 46.5
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 7.3e-92 342.0 468 41.9
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 9.5e-92 341.7 506 42.3
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 1.6e-91 340.9 422 44.8
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 2.8e-91 340.1 504 42.9
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 3.6e-91 339.7 466 43.6
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 8.1e-91 338.6 413 47.7
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.4e-90 337.8 408 46.1
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 1.4e-90 337.8 441 43.3
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.4e-90 337.8 439 45.1
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 3.1e-90 336.7 419 45.8
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.1e-90 336.7 419 45.1
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 4.0e-90 336.3 481 43.2
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 4.0e-90 336.3 446 44.6
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 4.0e-90 336.3 504 42.9
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 8.9e-90 335.1 449 43.9
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 8.9e-90 335.1 492 41.5
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 2.6e-89 333.6 488 41.8
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 3.4e-89 333.2 432 45.4
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 3.4e-89 333.2 422 44.8
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 7.5e-89 332.0 396 47.5
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 9.9e-89 331.6 416 44.7
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 9.9e-89 331.6 409 44.3
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.7e-88 330.9 432 44.7
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.7e-88 330.9 418 46.2
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 2.2e-88 330.5 507 43.8
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 3.7e-88 329.7 449 45.0
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 3.7e-88 329.7 419 46.1
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 4.9e-88 329.3 464 43.3
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 4.9e-88 329.3 445 44.0
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 6.4e-88 328.9 474 43.0
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 8.3e-88 328.6 429 45.2
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 8.3e-88 328.6 483 42.4
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.4e-87 327.8 475 41.7
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 3.2e-87 326.6 449 41.9
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 4.1e-87 326.2 433 43.2
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 4.1e-87 326.2 429 45.0
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 5.4e-87 325.9 486 41.8
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 5.4e-87 325.9 453 42.8
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 9.2e-87 325.1 481 43.0
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 9.2e-87 325.1 486 41.6
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 9.2e-87 325.1 429 45.5
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 1.2e-86 324.7 506 41.5
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.2e-86 324.7 486 41.6
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 2.1e-86 323.9 476 42.2
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 3.5e-86 323.2 489 41.9
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 4.6e-86 322.8 434 44.0
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 4.6e-86 322.8 488 42.0
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 6.0e-86 322.4 481 42.6
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 7.8e-86 322.0 461 40.3
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.3e-85 321.2 409 44.3
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.3e-85 321.2 482 41.5
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.3e-85 321.2 507 40.4
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.3e-85 321.2 448 42.6
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.7e-85 320.9 435 44.4
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 1.7e-85 320.9 409 44.7
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.7e-85 320.9 485 40.6
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.7e-85 320.9 418 45.0
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.7e-85 320.9 498 40.4
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 2.3e-85 320.5 481 42.0
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 2.3e-85 320.5 422 44.5
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.3e-85 320.5 476 41.6
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.3e-85 320.5 492 41.5
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 3.0e-85 320.1 409 44.3
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 3.0e-85 320.1 424 44.3
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 3.0e-85 320.1 477 39.8
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.9e-85 319.7 490 42.7
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 5.1e-85 319.3 488 42.0
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 6.6e-85 318.9 463 41.9
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 6.6e-85 318.9 463 41.9
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 6.6e-85 318.9 461 42.5
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 6.6e-85 318.9 424 44.1
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 1.5e-84 317.8 492 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.5e-84 317.0 490 40.0
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 3.3e-84 316.6 409 44.0
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 7.3e-84 315.5 409 43.5
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 7.3e-84 315.5 436 42.4
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 1.2e-83 314.7 481 40.7
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.6e-83 314.3 409 43.8
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 1.6e-83 314.3 419 44.4
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 2.8e-83 313.5 436 41.5
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 3.6e-83 313.2 419 43.9
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.7e-83 312.8 457 42.0
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 6.2e-83 312.4 410 43.4
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 8.1e-83 312.0 439 42.1
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-82 311.6 436 41.3
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.8e-82 310.8 470 41.1
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.8e-82 310.8 493 40.2
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 5.2e-82 309.3 467 41.3
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 6.8e-82 308.9 421 43.7
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 8.9e-82 308.5 415 43.1
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.2e-81 308.1 483 39.8
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 2.0e-81 307.4 469 41.2
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 3.4e-81 306.6 471 40.8
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 2.2e-80 303.9 479 39.7
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 2.1e-78 297.4 389 45.5
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 4.6e-78 296.2 468 41.5
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 6.0e-78 295.8 546 35.5
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.0e-77 295.0 291 52.2
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 3.0e-77 293.5 435 41.4
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-76 291.2 417 41.2
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.9e-76 290.8 456 40.8
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 3.3e-76 290.0 305 51.8
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.6e-75 287.7 467 39.0
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.1e-74 285.0 372 45.2
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.8e-74 284.3 398 41.7
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.4e-74 283.9 379 43.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 3.1e-74 283.5 481 38.3
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 1.2e-73 281.6 463 40.2
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 3.4e-73 280.0 282 52.5
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 3.4e-73 280.0 482 38.4
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 2.2e-72 277.3 486 36.0
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 3.9e-69 266.5 404 40.8
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 5.3e-66 256.1 387 40.6
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 5.8e-65 252.7 446 38.6
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 2.1e-62 244.2 366 41.5
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 6.0e-62 242.7 465 36.3
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 6.2e-59 232.6 336 43.8
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 1.5e-57 228.0 296 45.6
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 1.3e-53 214.9 362 37.8
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 3.0e-53 213.8 371 36.9
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.7e-53 212.6 466 34.1
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 5.3e-50 203.0 278 44.2
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 1.7e-48 198.0 287 40.4
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 2.2e-48 197.6 298 41.9
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 1.1e-47 195.3 252 45.6
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.4e-47 194.9 378 36.0
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.6e-43 181.4 174 54.6
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.1e-42 178.7 296 37.5
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 9.0e-42 175.6 183 50.8
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 5.9e-41 172.9 280 38.2
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 1.5e-36 158.3 225 43.1
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.3e-35 155.2 258 37.2
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-27 127.5 175 41.7
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 1.5e-25 121.7 132 49.2
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 9.7e-20 102.4 198 35.4
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 9.1e-18 95.9 119 46.2
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 4.5e-17 93.6 66 60.6
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 3.3e-12 77.4 76 48.7
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 3.3e-12 77.4 98 42.9
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.4e-10 71.2 71 46.5
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 4.1e-10 70.5 47 63.8
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 7.0e-10 69.7 45 64.4
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 2.0e-09 68.2 47 61.7
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 1.3e-08 65.5 176 26.1
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 8.0e-06 56.2 43 55.8


User provided reference genes

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