Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.0e-110 402.5 211 100.0
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.9e-97 359.4 212 90.1
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.9e-90 335.1 218 79.8
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.9e-89 332.8 218 79.8
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 2.3e-74 282.7 218 71.1
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.5e-73 279.3 211 71.1
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 4.8e-72 275.0 211 70.6
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.3e-69 266.9 164 79.9
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 4.9e-69 265.0 161 80.7
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.1e-68 263.8 172 76.7
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.4e-68 263.5 172 77.3
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.9e-68 263.1 159 81.1
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.9e-68 263.1 155 82.6
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.4e-68 262.7 165 78.8
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.2e-68 261.9 160 80.6
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 4.2e-68 261.9 163 79.1
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 5.4e-68 261.5 157 80.9
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 7.1e-68 261.2 157 81.5
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 9.3e-68 260.8 162 79.0
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.2e-67 260.4 159 80.5
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.2e-67 260.4 159 80.5
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.6e-67 260.0 170 76.5
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.6e-67 260.0 163 80.4
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.1e-67 259.6 160 79.4
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 2.1e-67 259.6 154 81.8
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.1e-67 259.6 206 68.0
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 2.1e-67 259.6 160 79.4
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 2.7e-67 259.2 165 78.8
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 2.7e-67 259.2 160 80.6
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.7e-67 259.2 158 81.0
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 3.5e-67 258.8 207 67.1
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 4.6e-67 258.5 158 79.7
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 4.6e-67 258.5 158 79.7
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 6.0e-67 258.1 205 67.3
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.0e-67 258.1 150 82.7
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.0e-67 258.1 163 78.5
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 6.0e-67 258.1 163 78.5
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 6.0e-67 258.1 160 80.0
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 6.0e-67 258.1 161 79.5
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 7.9e-67 257.7 200 68.5
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.9e-67 257.7 205 66.8
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.9e-67 257.7 150 82.0
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 7.9e-67 257.7 160 80.0
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 7.9e-67 257.7 195 68.2
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.0e-66 257.3 155 80.0
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.0e-66 257.3 200 68.5
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.0e-66 257.3 161 78.9
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.0e-66 257.3 214 66.4
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.0e-66 257.3 146 84.9
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.3e-66 256.9 154 81.2
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.3e-66 256.9 173 75.7
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.3e-66 256.9 155 79.4
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 1.3e-66 256.9 213 66.2
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.7e-66 256.5 194 69.6
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.7e-66 256.5 160 78.8
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.7e-66 256.5 160 78.8
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.7e-66 256.5 160 78.8
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.7e-66 256.5 160 78.8
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.7e-66 256.5 148 83.1
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 1.7e-66 256.5 155 81.9
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.7e-66 256.5 158 79.7
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.7e-66 256.5 162 78.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.3e-66 256.1 157 79.6
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 3.0e-66 255.8 161 78.3
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.0e-66 255.8 205 66.3
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 3.0e-66 255.8 148 83.1
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 3.9e-66 255.4 206 66.5
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 3.9e-66 255.4 163 78.5
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 3.9e-66 255.4 157 80.3
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.9e-66 255.4 159 78.6
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.9e-66 255.4 161 77.6
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 5.1e-66 255.0 157 80.3
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 5.1e-66 255.0 224 64.3
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 5.1e-66 255.0 206 66.5
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 5.1e-66 255.0 148 82.4
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 5.1e-66 255.0 163 77.3
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 5.1e-66 255.0 155 80.0
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 6.6e-66 254.6 161 78.9
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 8.7e-66 254.2 157 79.0
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 8.7e-66 254.2 211 66.8
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.1e-65 253.8 160 78.1
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-65 253.8 205 66.3
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.5e-65 253.4 157 79.0
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.5e-65 253.4 160 78.1
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.5e-65 253.4 178 71.3
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.9e-65 253.1 218 64.2
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.9e-65 253.1 148 81.8
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.9e-65 253.1 210 65.7
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.9e-65 253.1 198 67.7
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 1.9e-65 253.1 165 75.2
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 3.3e-65 252.3 210 64.8
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 3.3e-65 252.3 159 76.7
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.3e-65 252.3 214 65.0
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 4.3e-65 251.9 148 81.8
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.3e-65 251.9 211 66.4
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 4.3e-65 251.9 205 66.8
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 7.3e-65 251.1 159 78.0
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 7.3e-65 251.1 207 65.7
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 7.3e-65 251.1 144 83.3
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 7.3e-65 251.1 158 77.8
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 9.6e-65 250.8 206 65.0
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 9.6e-65 250.8 203 66.0
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.6e-65 250.8 211 64.9
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 9.6e-65 250.8 209 66.5
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.3e-64 250.4 157 77.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.6e-64 250.0 205 66.3
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.1e-64 249.6 207 65.2
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 2.1e-64 249.6 209 65.1
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 2.1e-64 249.6 195 66.7
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 2.8e-64 249.2 208 64.9
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.6e-64 248.8 206 65.5
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 4.8e-64 248.4 208 64.9
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 6.2e-64 248.1 209 64.6
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 8.1e-64 247.7 208 64.4
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 8.1e-64 247.7 206 66.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.1e-63 247.3 211 65.4
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.1e-63 247.3 207 65.2
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.4e-63 246.9 207 64.7
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 1.4e-63 246.9 215 65.1
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.4e-63 246.1 143 83.2
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.4e-63 246.1 213 63.4
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 3.1e-63 245.7 211 64.0
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 4.0e-63 245.4 163 75.5
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 9.0e-63 244.2 143 83.2
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.0e-62 243.0 209 63.6
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.0e-62 243.0 143 82.5
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.6e-62 242.7 169 72.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.6e-62 242.7 169 72.8
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 2.6e-62 242.7 210 64.3
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 5.8e-62 241.5 214 62.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 1.3e-61 240.4 139 83.5
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 2.9e-61 239.2 211 62.6
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 2.9e-61 239.2 207 62.8
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.8e-61 238.8 198 67.2
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 7.1e-60 234.6 165 73.3
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 7.1e-60 234.6 165 73.3
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.0e-58 230.7 188 64.9
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 4.3e-57 225.3 140 80.0
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.6e-57 224.9 132 84.1
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 9.0e-55 217.6 214 59.8
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 3.4e-54 215.7 197 60.4
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 5.8e-54 214.9 146 74.7
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.7e-53 213.4 134 76.1
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 2.2e-53 213.0 147 72.1
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 4.2e-52 208.8 159 67.3
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 3.8e-45 185.7 151 64.9
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.0e-34 151.0 163 54.6
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.8e-34 150.2 213 46.5
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.7e-34 148.3 92 76.1
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 8.5e-29 131.3 74 85.1
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.1e-28 131.0 150 50.7
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 6.8e-10 68.6 104 45.2
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 8.8e-10 68.2 77 50.6
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 9.8e-09 64.7 104 46.2
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 6.3e-08 62.0 104 44.2


User provided reference genes

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