Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_22900 Physcomitrium patens HOM05D033550 ORTHO05D017832 7.1e-133 477.2 238 100.0
Pp3c12_18500 Physcomitrium patens HOM05D033550 ORTHO05D017832 2.1e-44 183.3 104 91.3
SEGI_25541 Sequoiadendron giganteum HOM05D007351 ORTHO05D017832 3.1e-35 152.9 160 50.0
SMO356G0017 Selaginella moellendorffii HOM05D007351 ORTHO05D017832 6.0e-31 138.7 150 49.3
Pp3s121_31 Physcomitrium patens HOM05D033550 ORTHO05D017832 7.3e-21 105.1 100 60.0
MCO11G501 Micromonas commoda HOM05D027270 ORTHO05D017832 7.9e-15 85.1 149 32.2
Cre16.g683300 Chlamydomonas reinhardtii HOM05D027270 ORTHO05D017832 3.0e-14 83.2 142 35.2
unitig_32.g11667 Utricularia gibba HOM05D007351 ORTHO05D009386 2.5e-13 80.1 133 37.6
CDE06G1133 Ceratophyllum demersum HOM05D007351 ORTHO05D009386 3.3e-13 79.7 133 39.8
RcHm_v2.0_Chr6g0298791 Rosa chinensis HOM05D007351 ORTHO05D009386 1.3e-12 77.8 133 37.6
FvH4_2g29770 Fragaria vesca HOM05D007351 ORTHO05D009386 1.6e-12 77.4 133 37.6
FAN24G0983 Fragaria x ananassa HOM05D007351 ORTHO05D009386 1.6e-12 77.4 133 37.6
FAN27G2935 Fragaria x ananassa HOM05D007351 ORTHO05D009386 1.6e-12 77.4 133 37.6
Lsat_1_v5_gn_6_21681 Lactuca sativa HOM05D007351 ORTHO05D009386 2.1e-12 77.0 133 36.8
Ciclev10009550m.g Citrus clementina HOM05D007351 ORTHO05D009386 2.8e-12 76.6 133 36.8
CSS0046405 Camellia sinensis var. sinensis HOM05D007351 ORTHO05D009386 3.7e-12 76.3 133 36.8
MSTRG.11754 Avicennia marina HOM05D007351 ORTHO05D009386 8.1e-12 75.1 133 36.8
ECA233G0102 Erigeron canadensis HOM05D007351 ORTHO05D009386 8.1e-12 75.1 133 36.1
FAN15G3188 Fragaria x ananassa HOM05D007351 ORTHO05D009386 1.1e-11 74.7 133 36.8
GSVIVG01035772001 Vitis vinifera HOM05D007351 ORTHO05D009386 1.1e-11 74.7 133 37.6
Hma1.2p1_0000F.1_g000940 Hydrangea macrophylla HOM05D007351 ORTHO05D009386 1.4e-11 74.3 133 36.1
PSO017G1621 Papaver somniferum HOM05D007351 ORTHO05D009386 1.4e-11 74.3 133 36.8
PSO170G0157 Papaver somniferum HOM05D007351 ORTHO05D009386 1.4e-11 74.3 133 36.8
MBI04_g00950_MAGBIO Magnolia biondii HOM05D007351 ORTHO05D009386 1.8e-11 73.9 133 36.8
Migut.A00300 Erythranthe guttata HOM05D007351 ORTHO05D009386 2.4e-11 73.6 133 36.8
HanXRQChr13g0402411 Helianthus annuus HOM05D007351 ORTHO05D009386 2.4e-11 73.6 132 35.6
Manes.16G118400 Manihot esculenta HOM05D007351 ORTHO05D009386 3.1e-11 73.2 133 36.8
MELO3C003678.2 Cucumis melo HOM05D007351 ORTHO05D009386 4.0e-11 72.8 144 36.8
Lj8A616G46 Lonicera japonica HOM05D007351 ORTHO05D009386 4.0e-11 72.8 133 36.8
TAR625G1337 Trochodendron aralioides HOM05D007351 ORTHO05D009386 4.0e-11 72.8 133 37.6
Aqoxy7G02003 Aquilegia oxysepala HOM05D007351 ORTHO05D009386 5.3e-11 72.4 133 36.1
TWI34G1290 Tripterygium wilfordii HOM05D007351 ORTHO05D009386 5.3e-11 72.4 133 36.1
Atru.chr7.2359 Acer truncatum HOM05D007351 ORTHO05D009386 6.9e-11 72.0 133 36.8
Eucgr.C01805 Eucalyptus grandis HOM05D007351 ORTHO05D009386 6.9e-11 72.0 133 36.8
Os05g0574700 Oryza sativa ssp. japonica HOM05D007351 ORTHO05D009386 6.9e-11 72.0 133 37.6
Cpa.g.sc91.32 Carica papaya HOM05D007351 ORTHO05D009386 9.0e-11 71.6 138 34.8
Sed0005695 Sechium edule HOM05D007351 ORTHO05D009386 9.0e-11 71.6 202 32.7
SEGI_27006 Sequoiadendron giganteum HOM05D007351 ORTHO05D009386 9.0e-11 71.6 134 35.8
Actinidia15698 Actinidia chinensis HOM05D007351 ORTHO05D009386 1.2e-10 71.2 133 35.3
CsaV3_3G046600 Cucumis sativus L. HOM05D007351 ORTHO05D009386 1.2e-10 71.2 130 37.7
Potri.006G249000 Populus trichocarpa HOM05D007351 ORTHO05D009386 1.2e-10 71.2 133 36.8
Sabra06G0194800 Salix brachista HOM05D007351 ORTHO05D009386 1.2e-10 71.2 133 36.8
Aa31sc586G10 Aethionema arabicum HOM05D007351 ORTHO05D009386 1.5e-10 70.9 133 36.8
CiPaw.08G014100 Carya illinoinensis HOM05D007351 ORTHO05D009386 1.5e-10 70.9 133 36.8
COL.COLO4_24001 Corchorus olitorius HOM05D007351 ORTHO05D009386 1.5e-10 70.9 132 36.4
Gohir.A08G090000 Gossypium hirsutum HOM05D007351 ORTHO05D009386 1.5e-10 70.9 132 37.1
Prupe.1G471900 Prunus persica HOM05D007351 ORTHO05D009386 1.5e-10 70.9 133 36.1
SGA_v2.0_scaffold448G51771 Striga asiatica HOM05D007351 ORTHO05D009386 1.5e-10 70.9 151 33.1
Thecc.09G147600 Theobroma cacao HOM05D007351 ORTHO05D009386 1.5e-10 70.9 133 36.8
Nn2g11909 Nelumbo nucifera HOM05D007351 ORTHO05D009386 2.0e-10 70.5 133 36.8
ATR0680G179 Amborella trichopoda HOM05D007351 ORTHO05D009386 2.6e-10 70.1 134 36.6
BcaB06g28079 Brassica carinata HOM05D007351 ORTHO05D009386 2.6e-10 70.1 133 36.8
Glyma.06G071600 Glycine max HOM05D007351 ORTHO05D009386 2.6e-10 70.1 133 34.6
MD08G1141900 Malus domestica HOM05D007351 ORTHO05D009386 2.6e-10 70.1 133 36.1
AL4G17070 Arabidopsis lyrata HOM05D007351 ORTHO05D009386 3.4e-10 69.7 133 36.1
BcaC02g08337 Brassica carinata HOM05D007351 ORTHO05D009386 3.4e-10 69.7 133 36.1
A04p19820 Brassica napus HOM05D007351 ORTHO05D009386 3.4e-10 69.7 133 36.1
C04p55560 Brassica napus HOM05D007351 ORTHO05D009386 3.4e-10 69.7 133 36.1
BolC4t27080H Brassica oleracea HOM05D007351 ORTHO05D009386 3.4e-10 69.7 133 36.1
BraA04t17570Z Brassica rapa HOM05D007351 ORTHO05D009386 3.4e-10 69.7 133 36.1
Ca_15711_v3 Cicer arietinum L. HOM05D007351 ORTHO05D009386 3.4e-10 69.7 133 36.1
Gorai.004G110800 Gossypium raimondii HOM05D007351 ORTHO05D009386 3.4e-10 69.7 132 36.4
Lalb_Chr23g0268831 Lupinus albus HOM05D007351 ORTHO05D009386 3.4e-10 69.7 133 35.3
Rhsim07G0150700 Rhododendron simsii HOM05D007351 ORTHO05D009386 3.4e-10 69.7 145 35.2
AT2G25605 Arabidopsis thaliana HOM05D007351 ORTHO05D009386 4.5e-10 69.3 133 35.3
vmacro05202 Vaccinium macrocarpon HOM05D007351 ORTHO05D009386 4.5e-10 69.3 133 34.6
Medtr3g107860 Medicago truncatula HOM05D007351 ORTHO05D009386 5.8e-10 68.9 133 35.3
Phvul.009G096100 Phaseolus vulgaris HOM05D007351 ORTHO05D009386 5.8e-10 68.9 133 35.3
Mapoly0036s0071 Marchantia polymorpha HOM05D007351 ORTHO05D009386 7.6e-10 68.6 132 36.4
arahy.Tifrunner.gnm1.ann1.C4YKET Arachis hypogaea HOM05D007351 ORTHO05D009386 1.3e-09 67.8 133 35.3
CARHR115710 Cardamine hirsuta HOM05D007351 ORTHO05D009386 1.3e-09 67.8 133 35.3
Cc11_g01660 Coffea canephora HOM05D007351 ORTHO05D009386 1.3e-09 67.8 133 35.3
Thhalv10000330m.g Eutrema salsugineum HOM05D007351 ORTHO05D009386 1.3e-09 67.8 133 36.8
Sp4g05090 Schrenkiella parvula HOM05D007351 ORTHO05D009386 1.3e-09 67.8 129 37.2
THA.LOC104804500 Tarenaya hassleriana HOM05D007351 ORTHO05D009386 1.3e-09 67.8 133 36.1
TPR.G27335 Trifolium pratense HOM05D007351 ORTHO05D009386 1.7e-09 67.4 135 34.8
VMungo1309G2796 Vigna mungo HOM05D007351 ORTHO05D009386 1.7e-09 67.4 130 35.4
Nitab4.5_0000508g0220 Nicotiana tabacum HOM05D007351 ORTHO05D009386 2.2e-09 67.0 133 36.1
Psat5g027160 Pisum sativum HOM05D007351 ORTHO05D009386 2.2e-09 67.0 133 35.3
Sc06g0000580 Simmondsia chinensis HOM05D007351 ORTHO05D009386 2.2e-09 67.0 133 35.3
Glyma.04G069700 Glycine max HOM05D007351 ORTHO05D009386 2.9e-09 66.6 133 33.8
Peaxi162Scf00251g01128 Petunia axillaris HOM05D007351 ORTHO05D009386 2.9e-09 66.6 133 36.1
Carub.0004s0533 Capsella rubella HOM05D007351 ORTHO05D009386 3.8e-09 66.2 133 35.3
Lj1g0014043 Lotus japonicus HOM05D007351 ORTHO05D009386 3.8e-09 66.2 133 35.3
PGSC0003DMG400007382 Solanum tuberosum HOM05D007351 ORTHO05D009386 6.4e-09 65.5 133 35.3
CBR_g40414 Chara braunii HOM05D007351 ORTHO05D009386 8.4e-09 65.1 136 33.1
Solyc08g067430.4 Solanum lycopersicum HOM05D007351 ORTHO05D009386 8.4e-09 65.1 133 35.3
AagrBONN_evm.TU.Sc2ySwM_228.1243 Anthoceros agrestis HOM05D007351 ORTHO05D009386 1.1e-08 64.7 145 35.2
Cre17.g746897 Chlamydomonas reinhardtii HOM05D007351 ORTHO05D009386 1.9e-08 63.9 132 29.5
Hund03010 Selenicereus undatus HOM05D007351 ORTHO05D009386 1.9e-08 63.9 127 35.4
Sopen08g021360 Solanum pennellii HOM05D007351 ORTHO05D009386 1.9e-08 63.9 128 35.9
SMO269G0024 Selaginella moellendorffii HOM05D007351 ORTHO05D009386 2.5e-08 63.5 133 33.1
EL10Ac2g02569 Beta vulgaris HOM05D007351 ORTHO05D009386 3.2e-08 63.2 146 33.6
DCAR_003046 Daucus carota HOM05D007351 ORTHO05D009386 5.5e-08 62.4 121 34.7
PGR031G1798 Punica granatum HOM05D007351 ORTHO05D009386 7.1e-08 62.0 115 38.3
AUR62041846 Chenopodium quinoa HOM05D007351 ORTHO05D009386 1.2e-07 61.2 143 32.9
Zm00001eb344390 Zea mays HOM05D007351 ORTHO05D009386 1.6e-07 60.8 115 36.5
AUR62032351 Chenopodium quinoa HOM05D007351 ORTHO05D009386 2.7e-07 60.1 143 32.2
Pp3c17_16830 Physcomitrium patens HOM05D007351 ORTHO05D009386 2.7e-07 60.1 134 30.6
arahy.Tifrunner.gnm1.ann1.8MNE4Q Arachis hypogaea HOM05D007351 ORTHO05D009386 4.6e-07 59.3 154 33.1
Duzib150G1343 Durio zibethinus HOM05D007351 ORTHO05D009386 7.9e-07 58.5 115 35.7
Nitab4.5_0002339g0070 Nicotiana tabacum HOM05D007351 ORTHO05D009386 1.0e-06 58.2 131 34.4
Gohir.D08G102800 Gossypium hirsutum HOM05D007351 ORTHO05D009386 1.3e-06 57.8 115 35.7
QL12p031742 Quercus lobata HOM05D007351 ORTHO05D009386 8.7e-06 55.1 87 41.4


User provided reference genes

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