Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 4.1e-176 621.3 323 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.0e-101 373.2 298 65.8
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.6e-98 363.6 294 67.0
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 4.4e-85 318.9 245 63.7
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.8e-83 313.5 245 62.4
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.3e-76 290.8 300 50.0
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 3.7e-76 289.3 252 58.3
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 6.4e-76 288.5 252 57.9
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 8.3e-76 288.1 265 57.0
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.1e-75 287.7 259 59.8
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 1.1e-75 287.7 258 57.8
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.8e-75 287.0 300 52.7
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 1.8e-75 287.0 252 58.3
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.8e-75 287.0 299 53.5
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 3.2e-75 286.2 255 58.4
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 3.2e-75 286.2 257 58.0
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 3.2e-75 286.2 290 54.8
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.1e-75 285.8 259 57.5
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 4.1e-75 285.8 259 57.5
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.2e-74 284.3 240 58.8
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 1.2e-74 284.3 265 55.8
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.2e-74 284.3 259 56.0
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.2e-74 284.3 300 52.0
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.0e-74 283.5 257 57.2
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.0e-74 283.5 253 57.3
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.7e-74 283.1 258 57.8
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.7e-74 283.1 294 53.7
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 2.7e-74 283.1 258 57.8
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.7e-74 283.1 259 58.7
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 4.6e-74 282.3 265 55.8
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 6.0e-74 282.0 258 57.0
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 6.0e-74 282.0 292 53.1
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.0e-73 281.2 301 51.8
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.0e-73 281.2 257 58.0
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.3e-73 280.8 259 56.8
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 1.7e-73 280.4 294 53.4
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.7e-73 280.4 294 53.4
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.7e-73 280.4 255 56.5
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.7e-73 280.4 258 55.0
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.3e-73 280.0 257 55.3
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 3.9e-73 279.3 295 51.2
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 5.0e-73 278.9 296 50.0
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.0e-73 278.9 258 55.0
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 8.6e-73 278.1 295 49.2
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.6e-73 278.1 266 53.4
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 8.6e-73 278.1 247 57.5
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 8.6e-73 278.1 259 55.2
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.1e-72 277.7 311 52.4
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.5e-72 277.3 258 55.8
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 1.5e-72 277.3 258 55.8
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.9e-72 276.9 259 53.3
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 1.9e-72 276.9 248 54.8
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 2.5e-72 276.6 291 50.5
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.3e-72 276.2 319 50.5
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 3.3e-72 276.2 261 54.8
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 4.3e-72 275.8 288 51.4
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 5.6e-72 275.4 259 56.0
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 7.3e-72 275.0 252 54.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 7.3e-72 275.0 258 56.2
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 9.5e-72 274.6 320 50.6
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 9.5e-72 274.6 255 55.3
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.2e-71 274.2 295 47.8
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 1.2e-71 274.2 250 55.2
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.6e-71 273.9 296 50.3
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 2.1e-71 273.5 298 50.3
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 2.1e-71 273.5 298 50.3
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 2.1e-71 273.5 295 51.5
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 2.1e-71 273.5 251 57.4
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.8e-71 273.1 297 49.2
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.8e-71 273.1 295 51.2
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 2.8e-71 273.1 257 55.3
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 3.6e-71 272.7 269 55.0
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 6.2e-71 271.9 295 48.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.4e-70 270.8 252 52.8
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.8e-70 270.4 295 47.8
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 3.1e-70 269.6 292 49.7
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 3.1e-70 269.6 296 49.7
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-70 269.6 279 53.8
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 5.2e-70 268.9 258 53.1
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 5.2e-70 268.9 234 58.1
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 6.8e-70 268.5 258 53.9
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.9e-70 268.1 261 52.9
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 8.9e-70 268.1 258 53.1
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 8.9e-70 268.1 254 53.1
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.2e-69 267.7 257 53.3
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 1.2e-69 267.7 253 53.4
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.2e-69 267.7 257 53.3
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.2e-69 267.7 257 53.3
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.5e-69 267.3 295 50.2
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.5e-69 267.3 295 50.2
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 3.4e-69 266.2 259 52.1
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 7.5e-69 265.0 259 52.1
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 9.8e-69 264.6 238 55.9
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.7e-68 263.8 295 49.8
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 2.2e-68 263.5 224 58.0
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 2.2e-68 263.5 224 58.0
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 2.2e-68 263.5 281 50.5
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 3.7e-68 262.7 315 47.0
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.9e-68 262.3 306 48.0
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 6.4e-68 261.9 252 54.4
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.4e-67 260.8 254 52.8
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.9e-67 260.4 275 52.7
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 6.0e-66 255.4 239 54.8
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.0e-65 254.6 251 52.6
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.3e-65 254.2 259 54.8
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 3.0e-65 253.1 224 56.7
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 6.6e-65 251.9 287 48.4
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.5e-64 250.8 325 44.9
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.9e-64 250.4 259 51.0
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 4.3e-64 249.2 222 55.4
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 5.6e-64 248.8 262 49.6
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 9.5e-64 248.1 227 55.1
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 4.7e-63 245.7 335 46.3
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 8.1e-63 245.0 290 46.6
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 4.0e-62 242.7 211 57.3
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 8.9e-62 241.5 234 53.0
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 2.6e-61 240.0 258 50.4
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 3.4e-61 239.6 229 52.4
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 9.9e-61 238.0 267 50.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.4e-59 234.2 234 51.3
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 2.4e-59 233.4 250 48.4
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.9e-57 226.1 192 58.3
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.1e-55 220.3 313 43.1
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.7e-55 219.2 250 46.8
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.5e-53 214.2 255 45.9
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.3e-49 200.3 216 48.6
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.6e-47 194.1 142 65.5
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 4.7e-47 192.6 142 64.8
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 6.2e-47 192.2 142 62.7
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 2.4e-46 190.3 286 44.8
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 9.0e-46 188.3 179 54.7
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 8.4e-44 181.8 178 55.6
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-43 181.4 166 54.2
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 9.3e-43 178.3 208 44.7
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-39 167.5 240 41.7
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 3.1e-38 163.3 219 46.6
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 7.6e-37 158.7 127 61.4
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 2.9e-36 156.8 281 35.9
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 4.2e-35 152.9 124 62.9
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.7e-34 150.2 97 68.0
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.8e-33 147.5 169 50.9
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.9e-27 127.5 128 47.7
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 2.3e-25 120.6 87 62.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.4e-22 111.3 88 59.1
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.8e-22 110.9 177 40.1
Pp3c25_12270 Physcomitrium patens HOM05D004215 ORTHO05D005293 6.9e-22 109.0 95 63.2
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 4.5e-21 106.3 138 44.9
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 8.4e-20 102.1 84 59.5
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 4.3e-16 89.7 62 62.9
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.7e-16 88.6 65 63.1
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 2.0e-13 80.9 49 75.5
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 4.5e-13 79.7 67 59.7
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 5.9e-13 79.3 267 27.0
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 7.7e-13 79.0 129 36.4
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 2.9e-12 77.0 265 22.6
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 1.1e-11 75.1 151 27.8
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 7.4e-08 62.4 156 28.8
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 8.2e-07 58.9 152 28.9
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 3.1e-06 57.0 181 27.1


User provided reference genes

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