Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 9.7e-39 162.9 78 100.0
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 2.6e-31 138.3 74 83.8
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 5.0e-19 97.4 68 64.7
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 6.6e-19 97.1 70 64.3
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 8.6e-19 96.7 71 62.0
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 1.9e-18 95.5 71 62.0
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 2.5e-18 95.1 71 60.6
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 2.5e-18 95.1 71 62.0
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 3.3e-18 94.7 71 60.6
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 4.2e-18 94.4 71 60.6
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 5.5e-18 94.0 71 60.6
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 5.5e-18 94.0 70 62.9
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 7.2e-18 93.6 71 59.2
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 7.2e-18 93.6 71 59.2
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 7.2e-18 93.6 71 60.6
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 1.2e-17 92.8 71 59.2
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 1.6e-17 92.4 71 59.2
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 1.6e-17 92.4 71 59.2
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 2.1e-17 92.0 71 59.2
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 2.1e-17 92.0 71 59.2
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 2.1e-17 92.0 71 59.2
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 2.1e-17 92.0 71 59.2
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 2.8e-17 91.7 71 59.2
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 2.8e-17 91.7 71 60.6
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 3.6e-17 91.3 71 57.7
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 4.7e-17 90.9 71 60.6
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 4.7e-17 90.9 71 57.7
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 59.2
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 57.7
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 57.7
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 57.7
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 54.9
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 57.7
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 57.7
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 57.7
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 6.1e-17 90.5 71 57.7
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 8.0e-17 90.1 71 57.7
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 8.0e-17 90.1 69 60.9
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 8.0e-17 90.1 71 57.7
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 8.0e-17 90.1 71 57.7
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 8.0e-17 90.1 70 60.0
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 8.0e-17 90.1 71 57.7
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 1.4e-16 89.4 71 56.3
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 1.4e-16 89.4 71 56.3
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.4e-16 89.4 71 56.3
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 1.4e-16 89.4 71 57.7
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 1.4e-16 89.4 71 56.3
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 1.4e-16 89.4 71 57.7
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 1.8e-16 89.0 71 57.7
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.8e-16 89.0 70 58.6
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 1.8e-16 89.0 71 56.3
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 1.8e-16 89.0 71 54.9
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 2.3e-16 88.6 71 56.3
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 2.3e-16 88.6 71 56.3
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 3.0e-16 88.2 71 54.9
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 3.0e-16 88.2 71 56.3
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 3.0e-16 88.2 71 57.7
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 4.0e-16 87.8 70 57.1
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 5.2e-16 87.4 71 56.3
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 5.2e-16 87.4 71 57.7
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 6.8e-16 87.0 70 57.1
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 6.8e-16 87.0 71 56.3
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 8.9e-16 86.7 71 54.9
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 8.9e-16 86.7 71 56.3
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 8.9e-16 86.7 70 55.7
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 2.0e-15 85.5 63 60.3
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 2.0e-15 85.5 63 60.3
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 2.0e-15 85.5 70 54.3
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 2.0e-15 85.5 71 54.9
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 3.4e-15 84.7 63 58.7
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 3.4e-15 84.7 71 54.9
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 4.4e-15 84.3 71 54.9
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 5.7e-15 84.0 71 54.9
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 7.5e-15 83.6 71 54.9
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 9.8e-15 83.2 57 66.7
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.3e-14 82.8 67 56.7
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.3e-14 82.8 71 54.9
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 2.9e-14 81.6 70 52.9
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 6.3e-14 80.5 70 51.4
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 8.3e-14 80.1 70 51.4
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 1.1e-13 79.7 56 62.5
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 1.4e-13 79.3 67 53.7
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 2.4e-13 78.6 64 57.8
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 2.4e-13 78.6 63 55.6
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 4.1e-13 77.8 56 60.7
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 5.4e-13 77.4 56 60.7
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 5.4e-13 77.4 74 44.6
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 7.0e-13 77.0 64 51.6
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.2e-12 76.3 60 55.0
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.2e-12 76.3 58 56.9
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 1.2e-12 76.3 64 54.7
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 1.2e-12 76.3 56 62.5
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.6e-12 75.9 60 55.0
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 1.6e-12 75.9 58 60.3
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 1.6e-12 75.9 57 56.1
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 1.6e-12 75.9 71 52.1
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 2.0e-12 75.5 56 60.7
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 2.0e-12 75.5 56 55.4
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 2.7e-12 75.1 56 60.7
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 2.7e-12 75.1 56 60.7
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 2.7e-12 75.1 60 56.7
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 2.7e-12 75.1 56 60.7
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 3.5e-12 74.7 56 60.7
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.6e-12 74.3 56 58.9
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 4.6e-12 74.3 56 58.9
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 4.6e-12 74.3 56 60.7
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 5.9e-12 73.9 56 57.1
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 5.9e-12 73.9 56 57.1
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 5.9e-12 73.9 56 57.1
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 5.9e-12 73.9 56 57.1
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 7.8e-12 73.6 56 58.9
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 7.8e-12 73.6 56 57.1
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 7.8e-12 73.6 56 58.9
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 1.3e-11 72.8 56 57.1
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 5.0e-11 70.9 52 61.5
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 8.6e-11 70.1 56 55.4
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 2.5e-10 68.6 71 49.3
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 9.5e-10 66.6 48 58.3
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 2.1e-09 65.5 48 58.3
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 1.0e-08 63.2 44 59.1
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.3e-08 62.0 44 61.4
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 5.2e-08 60.8 44 63.6
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 2.0e-07 58.9 64 45.3
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 3.7e-06 54.7 52 51.9
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 4.9e-06 54.3 49 51.0


User provided reference genes

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