Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 0.0e+00 1170.6 556 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.2e-233 812.4 558 67.4
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 3.7e-233 811.6 556 66.7
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 5.2e-219 764.6 556 63.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 8.9e-219 763.8 556 64.7
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 5.8e-218 761.1 558 63.8
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 7.5e-218 760.8 557 63.9
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 8.3e-217 757.3 557 63.7
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 1.9e-216 756.1 555 63.2
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 5.4e-216 754.6 556 63.5
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 5.4e-216 754.6 556 63.7
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 1.2e-215 753.4 583 62.3
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 1.2e-215 753.4 556 63.5
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 1.2e-215 753.4 556 63.3
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.0e-215 752.7 557 63.4
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 3.5e-215 751.9 558 63.8
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 4.6e-215 751.5 557 63.2
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.0e-214 750.4 556 62.9
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 1.0e-214 750.4 543 64.6
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 1.0e-214 750.4 557 63.9
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 1.7e-214 749.6 543 63.9
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 1.7e-214 749.6 543 64.5
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 2.3e-214 749.2 556 62.4
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 3.9e-214 748.4 556 63.1
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 3.9e-214 748.4 557 62.3
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 6.6e-214 747.7 557 62.8
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 6.6e-214 747.7 558 62.0
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 8.6e-214 747.3 556 62.9
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 1.1e-213 746.9 557 63.4
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.1e-213 746.9 556 63.8
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.1e-213 746.9 564 62.6
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.5e-213 746.5 557 63.0
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.5e-213 746.5 556 62.9
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 2.5e-213 745.7 556 62.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 4.3e-213 745.0 550 62.9
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 7.3e-213 744.2 557 62.5
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 9.5e-213 743.8 556 62.9
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.2e-212 743.4 559 61.7
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 6.2e-212 741.1 556 63.3
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 6.2e-212 741.1 556 62.8
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 8.1e-212 740.7 577 61.0
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 2.3e-211 739.2 555 62.3
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 3.1e-211 738.8 564 62.1
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 3.1e-211 738.8 556 62.1
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.0e-211 738.4 559 61.5
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 2.6e-210 735.7 554 62.3
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 3.4e-210 735.3 546 63.2
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 5.8e-210 734.6 556 61.7
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 5.8e-210 734.6 546 62.3
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 9.8e-210 733.8 557 61.6
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 9.8e-210 733.8 556 61.9
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 1.3e-209 733.4 557 61.8
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 1.3e-209 733.4 557 61.8
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.7e-209 733.0 557 61.8
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 1.7e-209 733.0 557 61.8
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 2.2e-209 732.6 549 62.5
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 2.9e-209 732.3 557 61.9
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 3.7e-209 731.9 557 61.8
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 8.3e-209 730.7 554 62.3
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 2.4e-208 729.2 558 61.5
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 4.1e-208 728.4 558 61.3
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 5.4e-208 728.0 557 61.2
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 7.1e-208 727.6 556 61.2
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 2.7e-207 725.7 556 61.0
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 2.7e-207 725.7 557 61.2
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 2.7e-207 725.7 556 60.8
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 3.5e-207 725.3 557 61.2
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 2.3e-206 722.6 557 60.9
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 3.9e-206 721.8 557 61.0
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.1e-205 720.3 556 61.7
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.9e-205 719.5 528 63.3
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 2.5e-205 719.2 556 61.5
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 4.3e-205 718.4 527 63.2
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 9.5e-205 717.2 585 58.5
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 9.5e-205 717.2 531 62.7
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 2.8e-204 715.7 559 61.0
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 3.6e-204 715.3 557 62.3
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 4.7e-204 714.9 556 60.8
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 6.2e-204 714.5 585 58.6
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 4.0e-203 711.8 528 62.5
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 9.9e-202 707.2 556 59.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 4.1e-200 701.8 587 57.8
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.0e-198 697.2 557 60.0
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 5.1e-198 694.9 523 63.3
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 2.8e-196 689.1 686 51.0
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.3e-193 680.2 668 51.3
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 9.3e-192 674.1 549 59.2
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 8.7e-190 667.5 768 46.1
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.5e-189 666.0 579 56.1
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.8e-188 662.5 506 62.5
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.1e-188 661.0 596 54.7
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.0e-187 658.7 596 54.4
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 8.4e-185 651.0 499 61.5
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 5.1e-182 641.7 464 64.0
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 5.8e-178 628.2 471 62.8
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 5.8e-178 628.2 466 62.9
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 5.8e-178 628.2 554 56.0
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.8e-174 616.7 557 55.5
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 1.5e-173 613.6 471 61.1
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 9.0e-171 604.4 530 55.7
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.2e-170 604.0 567 54.5
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.0e-169 600.9 492 59.3
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.3e-166 590.5 479 58.7
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.5e-165 586.3 528 55.7
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.5e-152 543.1 528 52.7
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.6e-138 497.3 371 61.7
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 4.7e-135 485.7 364 61.5
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 4.8e-124 449.1 389 56.0
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 2.9e-121 439.9 443 51.0
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 6.4e-108 395.6 375 53.1
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.4e-102 377.9 304 59.5
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 3.4e-101 373.2 248 69.4
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 9.5e-96 355.1 469 43.9
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.6e-74 284.6 176 74.4
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.0e-70 270.0 182 65.9
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 3.4e-61 240.4 191 59.2
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.5e-56 224.9 166 63.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 2.9e-52 210.7 346 35.3
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 5.3e-46 189.9 131 68.7
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 3.2e-43 180.6 123 67.5
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.3e-40 170.6 165 47.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 6.5e-36 156.4 85 80.0
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.7e-34 151.0 140 50.7
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 2.7e-34 151.0 86 74.4
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 1.5e-32 145.2 128 53.9
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.3e-32 144.1 103 68.0
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 2.6e-29 134.4 91 68.1
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 3.0e-25 120.9 66 80.3
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 5.3e-22 110.2 159 38.4
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.3e-22 110.2 82 65.9
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 3.0e-17 94.4 156 31.4
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.2e-17 93.6 88 51.1
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 6.7e-17 93.2 53 71.7
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 8.8e-17 92.8 88 53.4
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 8.8e-17 92.8 88 53.4
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 8.8e-17 92.8 132 41.7
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 4.4e-16 90.5 173 32.4
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.2e-15 88.2 112 42.9
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 2.7e-13 81.3 159 30.2
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.9e-13 80.1 54 66.7
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.9e-13 80.1 54 68.5
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.9e-13 80.1 54 66.7
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.5e-12 76.6 54 64.8
Gohir.A08G245800 Gossypium hirsutum HOM05D001762 ORTHO05D001774 1.2e-10 72.4 152 32.9
Gohir.D08G266800 Gossypium hirsutum HOM05D001762 ORTHO05D001774 1.2e-10 72.4 152 32.9
Gorai.004G284600 Gossypium raimondii HOM05D001762 ORTHO05D001774 1.2e-10 72.4 152 32.9
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.8e-09 66.2 49 63.3
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.8e-09 66.2 49 63.3
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 5.7e-08 63.5 35 62.9
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 9.1e-06 56.2 54 53.7


User provided reference genes

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