Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 0.0e+00 1695.6 888 100.0
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 0.0e+00 1695.6 888 100.0
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.6e-307 1059.3 813 73.1
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 7.0e-258 894.4 820 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 3.0e-245 852.4 780 62.4
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 1.6e-185 654.1 809 47.6
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 2.0e-180 637.1 814 48.3
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 2.1e-174 617.1 810 45.1
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 8.2e-174 615.1 817 46.1
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 2.0e-172 610.5 819 44.7
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 1.0e-171 608.2 817 44.1
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 8.4e-171 605.1 817 44.2
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 3.0e-168 596.7 819 43.6
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 1.6e-166 590.9 820 43.4
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 4.8e-166 589.3 782 44.9
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 8.2e-166 588.6 814 43.5
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 5.9e-164 582.4 820 42.8
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 5.9e-164 582.4 813 43.7
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 2.2e-163 580.5 836 43.2
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 2.2e-163 580.5 777 43.9
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 6.5e-163 578.9 819 42.7
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 6.5e-163 578.9 810 43.7
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 7.2e-162 575.5 826 42.4
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 9.3e-162 575.1 813 43.1
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 3.6e-161 573.2 814 42.6
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 7.9e-161 572.0 830 41.7
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 7.9e-161 572.0 821 43.4
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 1.0e-160 571.6 814 42.4
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 1.3e-160 571.2 809 43.0
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 5.1e-160 569.3 803 43.0
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 5.1e-160 569.3 815 43.6
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 6.7e-160 568.9 816 43.6
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 8.8e-160 568.5 815 42.7
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 8.8e-160 568.5 815 42.5
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 1.1e-159 568.2 832 41.5
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 1.5e-159 567.8 813 42.1
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 5.7e-159 565.8 821 42.5
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 5.7e-159 565.8 803 43.1
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 7.4e-159 565.5 811 41.9
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 2.8e-158 563.5 803 42.3
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 3.7e-158 563.1 818 41.7
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 4.8e-158 562.8 811 42.4
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 4.8e-158 562.8 821 43.0
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 6.3e-158 562.4 820 42.4
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 1.8e-157 560.8 813 41.8
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 3.1e-157 560.1 819 42.5
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 5.3e-157 559.3 799 42.7
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 2.0e-156 557.4 863 40.8
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 2.6e-156 557.0 819 41.3
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 4.5e-156 556.2 812 42.9
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 5.9e-156 555.8 811 41.9
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 1.0e-155 555.1 813 41.1
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 1.0e-155 555.1 807 42.8
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 2.9e-155 553.5 813 41.2
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 3.8e-155 553.1 813 41.2
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 3.8e-155 553.1 832 40.7
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 5.0e-155 552.7 833 41.2
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 1.1e-154 551.6 818 41.3
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.4e-154 551.2 833 41.1
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 1.9e-154 550.8 831 40.4
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 3.2e-154 550.1 813 41.1
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 5.5e-154 549.3 820 41.5
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 4.7e-153 546.2 861 41.7
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 1.0e-152 545.0 807 42.0
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 1.0e-152 545.0 811 40.8
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 5.1e-152 542.7 780 42.7
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 3.3e-151 540.0 859 39.8
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 2.2e-150 537.3 823 40.8
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 3.7e-150 536.6 823 40.9
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 3.7e-150 536.6 798 41.1
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 4.8e-150 536.2 810 39.4
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 2.4e-149 533.9 831 40.1
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 2.4e-149 533.9 821 40.6
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 2.4e-149 533.9 817 40.9
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 3.8e-147 526.6 811 40.4
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 1.4e-146 524.6 816 40.4
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 4.2e-146 523.1 812 40.5
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 1.4e-144 518.1 831 39.8
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 1.5e-143 514.6 807 39.9
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 3.3e-143 513.5 797 40.4
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 3.3e-143 513.5 803 40.0
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 1.7e-142 511.1 811 40.3
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 4.8e-142 509.6 807 39.8
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 2.0e-140 504.2 807 39.4
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 2.9e-139 500.4 803 41.0
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 3.8e-139 500.0 761 41.1
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 5.0e-139 499.6 812 39.2
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 8.5e-139 498.8 962 35.9
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 1.1e-138 498.4 814 38.6
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 3.1e-133 480.3 787 40.0
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 3.8e-131 473.4 698 41.3
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 3.8e-131 473.4 811 39.1
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 2.3e-128 464.2 603 43.8
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 1.2e-127 461.8 813 37.4
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 2.4e-117 427.6 783 40.2
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 3.1e-117 427.2 688 40.3
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 3.4e-111 407.1 807 35.8
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 4.4e-103 380.2 443 46.7
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 2.7e-100 370.9 431 47.3
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 6.2e-97 359.8 376 50.3
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 2.3e-91 341.3 372 46.8
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 4.0e-88 330.5 333 50.8
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.0e-83 315.8 350 48.0
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 1.5e-82 312.0 804 30.1
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 1.9e-82 311.6 363 46.3
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 3.1e-80 304.3 543 38.7
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 6.4e-78 296.6 460 38.3
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 1.0e-75 289.3 353 44.2
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 8.4e-70 269.6 262 56.1
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 5.6e-58 230.3 246 50.4
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 6.2e-57 226.9 300 41.3
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 6.9e-56 223.4 249 49.4
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.9e-50 205.3 233 48.5
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 5.7e-50 203.8 379 37.7
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 1.3e-46 192.6 207 48.8
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 1.4e-45 189.1 236 42.8
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 1.0e-43 183.0 389 35.7
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.5e-34 152.5 298 36.9
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 3.3e-34 151.4 298 36.2
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 4.8e-33 147.5 178 44.4
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.1e-32 146.4 138 49.3
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 2.4e-32 145.2 199 45.2
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.5e-31 142.5 203 42.9
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 3.8e-30 137.9 176 45.5
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 1.2e-28 132.9 229 38.9
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 1.7e-25 122.5 338 31.7
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 8.2e-25 120.2 202 40.6
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.4e-24 119.4 90 58.9
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 1.8e-24 119.0 646 25.5
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 2.9e-22 111.7 125 47.2
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 1.3e-17 96.3 208 33.2
Haze_05933 Corylus avellana HOM05D000329 ORTHO05D005330 2.2e-14 85.5 84 50.0
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 4.2e-13 81.3 79 45.6
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 7.2e-13 80.5 160 32.5
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 4.7e-12 77.8 434 24.0
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 4.7e-12 77.8 82 41.5
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 4.8e-09 67.8 65 49.2
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 9.1e-08 63.5 81 45.7
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 2.3e-06 58.9 384 23.2


User provided reference genes

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