Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_16920 Physcomitrium patens HOM05D003055 ORTHO05D004002 2.2e-177 625.5 317 100.0
Pp3c27_2180 Physcomitrium patens HOM05D003055 ORTHO05D004002 3.5e-26 123.2 146 54.1
Pp3c27_2240 Physcomitrium patens HOM05D003055 ORTHO05D004002 3.5e-26 123.2 146 54.1
PGR044G1056 Punica granatum HOM05D003055 ORTHO05D004002 1.9e-24 117.5 162 43.8
Mapoly0113s0057 Marchantia polymorpha HOM05D003055 ORTHO05D004002 5.5e-24 115.9 157 49.7
MELO3C012333.2 Cucumis melo HOM05D003055 ORTHO05D004002 1.6e-23 114.4 160 48.1
SMO118G0011 Selaginella moellendorffii HOM05D003055 ORTHO05D004002 2.8e-23 113.6 146 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2861 Anthoceros agrestis HOM05D003055 ORTHO05D004002 1.4e-22 111.3 140 50.0
SGA_v2.0_scaffold278G46757 Striga asiatica HOM05D003055 ORTHO05D004002 2.3e-22 110.5 156 45.5
Sed0009816 Sechium edule HOM05D003055 ORTHO05D004002 2.6e-21 107.1 155 45.8
MBI19_g27265_MAGBIO Magnolia biondii HOM05D003055 ORTHO05D004002 3.4e-21 106.7 168 42.9
unitig_748.g8765 Utricularia gibba HOM05D003055 ORTHO05D004002 4.4e-21 106.3 157 45.2
ClCG05G021950 Citrullus lanatus HOM05D003055 ORTHO05D004002 5.7e-21 105.9 155 45.2
Lalb_Chr02g0150941 Lupinus albus HOM05D003055 ORTHO05D004002 9.8e-21 105.1 155 45.2
Sed0007836 Sechium edule HOM05D003055 ORTHO05D004002 1.7e-20 104.4 155 45.2
TWI63G0716 Tripterygium wilfordii HOM05D003055 ORTHO05D004002 1.7e-20 104.4 155 44.5
HPP92_020108 Vanilla planifolia HOM05D003055 ORTHO05D004002 1.7e-20 104.4 162 41.4
Sabra10G0189700 Salix brachista HOM05D003055 ORTHO05D004002 2.2e-20 104.0 155 44.5
SEGI_13785 Sequoiadendron giganteum HOM05D003055 ORTHO05D004002 2.2e-20 104.0 162 42.6
CANSAT56G0108 Cannabis sativa HOM05D003055 ORTHO05D004002 2.8e-20 103.6 155 44.5
Cc02_g09370 Coffea canephora HOM05D003055 ORTHO05D004002 2.8e-20 103.6 155 44.5
Dinv08584 Davidia involucrata HOM05D003055 ORTHO05D004002 2.8e-20 103.6 155 44.5
HanXRQChr05g0162021 Helianthus annuus HOM05D003055 ORTHO05D004002 2.8e-20 103.6 155 44.5
Rhsim03G0096100 Rhododendron simsii HOM05D003055 ORTHO05D004002 2.8e-20 103.6 157 43.3
MSTRG.9034 Avicennia marina HOM05D003055 ORTHO05D004002 3.7e-20 103.2 155 43.9
Cpa.g.sc694.2 Carica papaya HOM05D003055 ORTHO05D004002 3.7e-20 103.2 155 45.2
Duzib106G1693 Durio zibethinus HOM05D003055 ORTHO05D004002 3.7e-20 103.2 146 45.9
RcHm_v2.0_Chr1g0331931 Rosa chinensis HOM05D003055 ORTHO05D004002 3.7e-20 103.2 155 43.9
Atru.chr12.1074 Acer truncatum HOM05D003055 ORTHO05D004002 4.9e-20 102.8 162 41.4
FvH4_7g05380 Fragaria vesca HOM05D003055 ORTHO05D004002 4.9e-20 102.8 155 43.9
FAN07G0736 Fragaria x ananassa HOM05D003055 ORTHO05D004002 4.9e-20 102.8 155 43.9
MD08G1216900 Malus domestica HOM05D003055 ORTHO05D004002 4.9e-20 102.8 157 42.7
Manes.10G060100 Manihot esculenta HOM05D003055 ORTHO05D004002 4.9e-20 102.8 155 43.9
Potri.010G242700 Populus trichocarpa HOM05D003055 ORTHO05D004002 4.9e-20 102.8 155 43.9
Prupe.1G550400 Prunus persica HOM05D003055 ORTHO05D004002 4.9e-20 102.8 155 43.9
GSVIVG01033955001 Vitis vinifera HOM05D003055 ORTHO05D004002 4.9e-20 102.8 155 43.9
Actinidia34062 Actinidia chinensis HOM05D003055 ORTHO05D004002 6.3e-20 102.4 154 44.2
Ciclev10016516m.g Citrus clementina HOM05D003055 ORTHO05D004002 6.3e-20 102.4 162 41.4
Sabra08G0011900 Salix brachista HOM05D003055 ORTHO05D004002 6.3e-20 102.4 146 45.2
TAR369G0320 Trochodendron aralioides HOM05D003055 ORTHO05D004002 6.3e-20 102.4 155 43.9
Zm00001eb267590 Zea mays HOM05D003055 ORTHO05D004002 6.3e-20 102.4 146 45.2
Ah.04g162540 Amaranthus hybridus HOM05D003055 ORTHO05D004002 8.3e-20 102.1 146 44.5
Aqoxy1G00661 Aquilegia oxysepala HOM05D003055 ORTHO05D004002 8.3e-20 102.1 155 43.9
CSS0036043 Camellia sinensis var. sinensis HOM05D003055 ORTHO05D004002 8.3e-20 102.1 155 43.9
CARHR208430 Cardamine hirsuta HOM05D003055 ORTHO05D004002 8.3e-20 102.1 155 43.9
CiPaw.14G034900 Carya illinoinensis HOM05D003055 ORTHO05D004002 8.3e-20 102.1 155 43.9
Hma1.2p1_0926F.1_g237540 Hydrangea macrophylla HOM05D003055 ORTHO05D004002 8.3e-20 102.1 155 43.9
Nn6g34695 Nelumbo nucifera HOM05D003055 ORTHO05D004002 8.3e-20 102.1 155 43.9
Potri.008G018300 Populus trichocarpa HOM05D003055 ORTHO05D004002 8.3e-20 102.1 146 45.2
SalBow3G3414 Salvia bowleyana HOM05D003055 ORTHO05D004002 8.3e-20 102.1 155 43.2
TWI38G0789 Tripterygium wilfordii HOM05D003055 ORTHO05D004002 8.3e-20 102.1 155 43.9
Actinidia31111 Actinidia chinensis HOM05D003055 ORTHO05D004002 1.1e-19 101.7 155 43.9
AT5G04850 Arabidopsis thaliana HOM05D003055 ORTHO05D004002 1.1e-19 101.7 155 43.9
Gohir.A05G287100 Gossypium hirsutum HOM05D003055 ORTHO05D004002 1.1e-19 101.7 146 44.5
Gohir.D05G288200 Gossypium hirsutum HOM05D003055 ORTHO05D004002 1.1e-19 101.7 146 44.5
Gorai.009G303200 Gossypium raimondii HOM05D003055 ORTHO05D004002 1.1e-19 101.7 146 44.5
Lalb_Chr06g0169871 Lupinus albus HOM05D003055 ORTHO05D004002 1.1e-19 101.7 155 44.5
Os05g0102900 Oryza sativa ssp. japonica HOM05D003055 ORTHO05D004002 1.1e-19 101.7 146 44.5
Thecc.10G117200 Theobroma cacao HOM05D003055 ORTHO05D004002 1.1e-19 101.7 146 45.2
GSVIVG01034626001 Vitis vinifera HOM05D003055 ORTHO05D004002 1.1e-19 101.7 146 44.5
Cfa010523 Carpinus fangiana HOM05D003055 ORTHO05D004002 1.4e-19 101.3 155 43.9
HanXRQChr02g0053561 Helianthus annuus HOM05D003055 ORTHO05D004002 1.4e-19 101.3 155 43.9
Psat6g171920 Pisum sativum HOM05D003055 ORTHO05D004002 1.4e-19 101.3 146 45.2
Aa31LG11G5860 Aethionema arabicum HOM05D003055 ORTHO05D004002 1.8e-19 100.9 162 41.4
BcaB01g05917 Brassica carinata HOM05D003055 ORTHO05D004002 1.8e-19 100.9 155 43.9
BcaNung05152 Brassica carinata HOM05D003055 ORTHO05D004002 1.8e-19 100.9 155 43.9
C03p02250 Brassica napus HOM05D003055 ORTHO05D004002 1.8e-19 100.9 155 43.9
BolC3t12776H Brassica oleracea HOM05D003055 ORTHO05D004002 1.8e-19 100.9 155 43.9
Carub.0006s0376 Capsella rubella HOM05D003055 ORTHO05D004002 1.8e-19 100.9 155 43.2
CARHR085220 Cardamine hirsuta HOM05D003055 ORTHO05D004002 1.8e-19 100.9 157 42.7
Migut.F00845 Erythranthe guttata HOM05D003055 ORTHO05D004002 1.8e-19 100.9 155 42.6
Peaxi162Scf00120g01529 Petunia axillaris HOM05D003055 ORTHO05D004002 1.8e-19 100.9 153 42.5
Sp6g37980 Schrenkiella parvula HOM05D003055 ORTHO05D004002 1.8e-19 100.9 155 43.9
EL10Ac4g08721 Beta vulgaris HOM05D003055 ORTHO05D004002 2.4e-19 100.5 146 44.5
FAN01G0006 Fragaria x ananassa HOM05D003055 ORTHO05D004002 2.4e-19 100.5 155 43.2
Medtr1g090490 Medicago truncatula HOM05D003055 ORTHO05D004002 2.4e-19 100.5 146 44.5
Solyc11g006500.2 Solanum lycopersicum HOM05D003055 ORTHO05D004002 2.4e-19 100.5 146 44.5
Sopen11g002390 Solanum pennellii HOM05D003055 ORTHO05D004002 2.4e-19 100.5 146 44.5
PGSC0003DMG402001984 Solanum tuberosum HOM05D003055 ORTHO05D004002 2.4e-19 100.5 146 44.5
VMungo0720G1868 Vigna mungo HOM05D003055 ORTHO05D004002 2.4e-19 100.5 146 44.5
arahy.Tifrunner.gnm1.ann1.3L4KIC Arachis hypogaea HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 44.5
arahy.Tifrunner.gnm1.ann1.V7K45W Arachis hypogaea HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 44.5
CAN.G143.38 Capsicum annuum HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 44.5
AUR62034167 Chenopodium quinoa HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 43.8
AUR62034489 Chenopodium quinoa HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 43.8
Ca_10428_v3 Cicer arietinum L. HOM05D003055 ORTHO05D004002 3.1e-19 100.1 156 41.7
COL.COLO4_07818 Corchorus olitorius HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 44.5
Lj2A35T41 Lonicera japonica HOM05D003055 ORTHO05D004002 3.1e-19 100.1 155 43.2
Lj3C923T8 Lonicera japonica HOM05D003055 ORTHO05D004002 3.1e-19 100.1 155 42.6
Nitab4.5_0001781g0200 Nicotiana tabacum HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 43.8
Nitab4.5_0009933g0030 Nicotiana tabacum HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 43.8
Oeu009249.1 Olea europaea HOM05D003055 ORTHO05D004002 3.1e-19 100.1 157 43.3
Peaxi162Scf00519g00041 Petunia axillaris HOM05D003055 ORTHO05D004002 3.1e-19 100.1 146 43.2
ATR0037G030 Amborella trichopoda HOM05D003055 ORTHO05D004002 4.1e-19 99.8 146 45.2
Nn2g14302 Nelumbo nucifera HOM05D003055 ORTHO05D004002 4.1e-19 99.8 155 43.2
QL04p047928 Quercus lobata HOM05D003055 ORTHO05D004002 4.1e-19 99.8 146 43.8
QL04p047935 Quercus lobata HOM05D003055 ORTHO05D004002 4.1e-19 99.8 146 43.8
THA.LOC104816475 Tarenaya hassleriana HOM05D003055 ORTHO05D004002 4.1e-19 99.8 155 43.2
AL3G22110 Arabidopsis lyrata HOM05D003055 ORTHO05D004002 5.4e-19 99.4 155 43.9
AL6G14520 Arabidopsis lyrata HOM05D003055 ORTHO05D004002 5.4e-19 99.4 157 41.4
CiPaw.13G043700 Carya illinoinensis HOM05D003055 ORTHO05D004002 5.4e-19 99.4 155 43.2
MD15G1404000 Malus domestica HOM05D003055 ORTHO05D004002 5.4e-19 99.4 155 42.6
PSO339G4912 Papaver somniferum HOM05D003055 ORTHO05D004002 5.4e-19 99.4 146 43.8
PSO384G0200 Papaver somniferum HOM05D003055 ORTHO05D004002 5.4e-19 99.4 146 43.8
Phvul.007G137700 Phaseolus vulgaris HOM05D003055 ORTHO05D004002 5.4e-19 99.4 146 43.8
Sc09g0005090 Simmondsia chinensis HOM05D003055 ORTHO05D004002 5.4e-19 99.4 146 43.8
Haze_03463 Corylus avellana HOM05D003055 ORTHO05D004002 7.0e-19 99.0 138 44.9
Thhalv10021438m.g Eutrema salsugineum HOM05D003055 ORTHO05D004002 7.0e-19 99.0 163 41.7
Lsat_1_v5_gn_0_21121 Lactuca sativa HOM05D003055 ORTHO05D004002 7.0e-19 99.0 155 42.6
Lj5g0005985 Lotus japonicus HOM05D003055 ORTHO05D004002 7.0e-19 99.0 146 43.8
TPR.G37809 Trifolium pratense HOM05D003055 ORTHO05D004002 7.0e-19 99.0 146 43.8
Carub.0003s0987 Capsella rubella HOM05D003055 ORTHO05D004002 9.2e-19 98.6 155 43.2
Eucgr.J00289 Eucalyptus grandis HOM05D003055 ORTHO05D004002 9.2e-19 98.6 162 40.1
HanXRQChr05g0146171 Helianthus annuus HOM05D003055 ORTHO05D004002 9.2e-19 98.6 146 43.8
BcaC06g32192 Brassica carinata HOM05D003055 ORTHO05D004002 1.2e-18 98.2 155 42.6
A03p01880 Brassica napus HOM05D003055 ORTHO05D004002 1.2e-18 98.2 155 42.6
A10p31330 Brassica napus HOM05D003055 ORTHO05D004002 1.2e-18 98.2 155 42.6
C09p71970 Brassica napus HOM05D003055 ORTHO05D004002 1.2e-18 98.2 155 42.6
BolC9t59944H Brassica oleracea HOM05D003055 ORTHO05D004002 1.2e-18 98.2 155 42.6
ECA238G1602 Erigeron canadensis HOM05D003055 ORTHO05D004002 1.2e-18 98.2 155 41.9
Thhalv10014559m.g Eutrema salsugineum HOM05D003055 ORTHO05D004002 1.2e-18 98.2 155 42.6
Gohir.D10G203800 Gossypium hirsutum HOM05D003055 ORTHO05D004002 1.2e-18 98.2 146 44.5
Gorai.011G228600 Gossypium raimondii HOM05D003055 ORTHO05D004002 1.2e-18 98.2 146 44.5
Lsat_1_v5_gn_2_105880 Lactuca sativa HOM05D003055 ORTHO05D004002 1.2e-18 98.2 155 41.9
Glyma.10G195600 Glycine max HOM05D003055 ORTHO05D004002 1.6e-18 97.8 146 43.2
Nitab4.5_0011469g0020 Nicotiana tabacum HOM05D003055 ORTHO05D004002 1.6e-18 97.8 153 40.5
Rhsim09G0140900 Rhododendron simsii HOM05D003055 ORTHO05D004002 1.6e-18 97.8 155 42.6
AT3G10640 Arabidopsis thaliana HOM05D003055 ORTHO05D004002 2.7e-18 97.1 155 42.6
A03p36660 Brassica napus HOM05D003055 ORTHO05D004002 2.7e-18 97.1 155 43.2
C03p44300 Brassica napus HOM05D003055 ORTHO05D004002 2.7e-18 97.1 155 43.2
BraA03t12830Z Brassica rapa HOM05D003055 ORTHO05D004002 2.7e-18 97.1 155 43.2
CAN.G1433.3 Capsicum annuum HOM05D003055 ORTHO05D004002 3.5e-18 96.7 146 42.5
vmacro07271 Vaccinium macrocarpon HOM05D003055 ORTHO05D004002 3.5e-18 96.7 142 43.7
Gohir.A10G196700 Gossypium hirsutum HOM05D003055 ORTHO05D004002 4.5e-18 96.3 145 43.4
BraA03t09558Z Brassica rapa HOM05D003055 ORTHO05D004002 5.9e-18 95.9 150 41.3
CDE08G0531 Ceratophyllum demersum HOM05D003055 ORTHO05D004002 5.9e-18 95.9 146 43.2
BcaC01g04169 Brassica carinata HOM05D003055 ORTHO05D004002 7.8e-18 95.5 155 42.6
BolC3t16700H Brassica oleracea HOM05D003055 ORTHO05D004002 7.8e-18 95.5 155 42.6
DCAR_011995 Daucus carota HOM05D003055 ORTHO05D004002 7.8e-18 95.5 140 42.9
ECA232G4887 Erigeron canadensis HOM05D003055 ORTHO05D004002 7.8e-18 95.5 155 41.3
Sp3g08950 Schrenkiella parvula HOM05D003055 ORTHO05D004002 7.8e-18 95.5 155 42.6
Solyc05g055170.3 Solanum lycopersicum HOM05D003055 ORTHO05D004002 7.8e-18 95.5 146 41.8
Sopen05g033590 Solanum pennellii HOM05D003055 ORTHO05D004002 7.8e-18 95.5 146 41.8
PGSC0003DMG400023399 Solanum tuberosum HOM05D003055 ORTHO05D004002 7.8e-18 95.5 146 41.8
CDE06G1856 Ceratophyllum demersum HOM05D003055 ORTHO05D004002 1.0e-17 95.1 146 43.2
Nitab4.5_0000687g0220 Nicotiana tabacum HOM05D003055 ORTHO05D004002 1.0e-17 95.1 153 40.5
Hund06807 Selenicereus undatus HOM05D003055 ORTHO05D004002 1.3e-17 94.7 146 41.8
CBR_g38017 Chara braunii HOM05D003055 ORTHO05D004002 1.7e-17 94.4 146 41.1
Zm00001eb126990 Zea mays HOM05D003055 ORTHO05D004002 2.9e-17 93.6 146 42.5
Os01g0103000 Oryza sativa ssp. japonica HOM05D003055 ORTHO05D004002 6.6e-17 92.4 146 41.8
Hund22266 Selenicereus undatus HOM05D003055 ORTHO05D004002 1.5e-16 91.3 146 41.8
FAN10G0605 Fragaria x ananassa HOM05D003055 ORTHO05D004002 3.6e-15 86.7 168 38.7
Nn8g39931 Nelumbo nucifera HOM05D003055 ORTHO05D004002 2.3e-14 84.0 140 40.7
ATR0772G188 Amborella trichopoda HOM05D003055 ORTHO05D004002 8.9e-14 82.0 163 38.0
vmacro10323 Vaccinium macrocarpon HOM05D003055 ORTHO05D004002 3.4e-13 80.1 165 37.6
PRCOL_00000670 Prasinoderma coloniale HOM05D003055 ORTHO05D004002 4.1e-11 73.2 146 34.2
Lsat_1_v5_gn_5_70341 Lactuca sativa HOM05D003055 ORTHO05D004002 1.2e-10 71.6 131 38.2
Lsat_1_v5_gn_0_42020 Lactuca sativa HOM05D003055 ORTHO05D004002 1.6e-10 71.2 154 36.4
Lsat_1_v5_gn_3_109540 Lactuca sativa HOM05D003055 ORTHO05D004002 2.0e-10 70.9 131 38.9
MELO3C004965.2 Cucumis melo HOM05D003055 ORTHO05D004002 1.3e-09 68.2 108 43.5
Aa31LG7G1810 Aethionema arabicum HOM05D003055 ORTHO05D005415 3.0e-09 67.0 73 49.3
CSS0049378 Camellia sinensis var. sinensis HOM05D003055 ORTHO05D004002 3.0e-09 67.0 134 39.6
FAN06G0541 Fragaria x ananassa HOM05D003055 ORTHO05D004002 3.0e-09 67.0 122 38.5
MCO07G102 Micromonas commoda HOM05D003055 ORTHO05D004002 3.9e-09 66.6 146 34.9
TAR623G0671 Trochodendron aralioides HOM05D003055 ORTHO05D004002 1.2e-07 61.6 105 41.0
Duzib114G0839 Durio zibethinus HOM05D003055 ORTHO05D004002 1.6e-07 61.2 146 32.2
GSVIVG01034624001 Vitis vinifera HOM05D003055 ORTHO05D004002 2.1e-07 60.8 99 40.4
Aa31LG2G19680 Aethionema arabicum HOM05D003055 ORTHO05D005415 4.7e-07 59.7 70 47.1
Lsat_1_v5_gn_0_39180 Lactuca sativa HOM05D003055 ORTHO05D004002 1.8e-06 57.8 153 34.6
CsaV3_5G035200 Cucumis sativus L. HOM05D002527 ORTHO05D002865 3.1e-06 57.0 60 55.0
MBI19_g44564_MAGBIO Magnolia biondii HOM05D003055 ORTHO05D004002 4.0e-06 56.6 95 40.0
SEGI_31513 Sequoiadendron giganteum HOM05D003055 ORTHO05D004002 4.0e-06 56.6 100 37.0
CSS0032406 Camellia sinensis var. sinensis HOM05D003055 ORTHO05D004002 6.8e-06 55.8 77 41.6


User provided reference genes

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