Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_16740 Physcomitrium patens HOM05D019012 ORTHO05D020434 0.0e+00 2039.2 1056 100.0
Pp3c16_16743 Physcomitrium patens HOM05D019012 ORTHO05D020434 0.0e+00 2039.2 1056 100.0
Pp3c27_2010 Physcomitrium patens HOM05D019012 ORTHO05D020434 0.0e+00 1684.8 1060 81.6
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 6.5e-186 655.6 817 45.7
Mapoly0097s0085 Marchantia polymorpha HOM05D019012 ORTHO05D020434 5.8e-126 456.4 579 44.6
Pp3c3_2900 Physcomitrium patens HOM05D067070 ORTHO05D048796 5.2e-26 124.4 158 40.5
Mapoly0033s0119 Marchantia polymorpha HOM05D067070 ORTHO05D048796 2.0e-25 122.5 280 32.1
MCO06G219 Micromonas commoda HOM05D000104 ORTHO05D003467 2.1e-19 102.4 173 36.4
Cre06.g300850 Chlamydomonas reinhardtii HOM05D019012 ORTHO05D020434 5.8e-17 94.4 155 35.5
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 1.6e-14 86.3 133 33.8
Os09g0134500 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D005739 2.3e-13 82.4 136 34.6
MCO05G222 Micromonas commoda HOM05D019012 ORTHO05D020434 5.0e-13 81.3 304 27.6
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 2.5e-12 79.0 146 30.8
Cc00_g10020 Coffea canephora HOM05D000590 ORTHO05D005739 9.5e-12 77.0 127 33.9
MD04G1229800 Malus domestica HOM05D000329 ORTHO05D000833 1.6e-11 76.3 165 28.5
CsaV3_1G037770 Cucumis sativus L. HOM05D000329 ORTHO05D000833 2.8e-11 75.5 137 32.1
Actinidia32949 Actinidia chinensis HOM05D000590 ORTHO05D005739 8.0e-11 73.9 154 31.2
ATR0824G108 Amborella trichopoda HOM05D000590 ORTHO05D005739 8.0e-11 73.9 291 25.4
Cpa.g.sc50.132 Carica papaya HOM05D000590 ORTHO05D005739 1.1e-10 73.6 142 28.9
Prupe.6G349900 Prunus persica HOM05D000329 ORTHO05D000833 1.1e-10 73.6 162 27.2
MD12G1246900 Malus domestica HOM05D000329 ORTHO05D000833 1.8e-10 72.8 165 27.9
AagrBONN_evm.TU.Sc2ySwM_344.772 Anthoceros agrestis HOM05D000590 ORTHO05D005739 3.1e-10 72.0 136 29.4
BcaC07g42107 Brassica carinata HOM05D000590 ORTHO05D005739 3.1e-10 72.0 127 31.5
C08p51570 Brassica napus HOM05D000590 ORTHO05D005739 3.1e-10 72.0 127 31.5
Cfa006346 Carpinus fangiana HOM05D000329 ORTHO05D000833 3.1e-10 72.0 178 27.0
ClCG01G008900 Citrullus lanatus HOM05D000329 ORTHO05D000833 3.1e-10 72.0 149 32.9
Mapoly0051s0016 Marchantia polymorpha HOM05D000590 ORTHO05D005739 3.1e-10 72.0 198 27.3
CAN.G710.42 Capsicum annuum HOM05D000590 ORTHO05D005739 4.0e-10 71.6 136 34.6
Aqoxy1G01547 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 5.2e-10 71.2 139 31.7
Cfa008549 Carpinus fangiana HOM05D000590 ORTHO05D005739 6.8e-10 70.9 154 29.2
MELO3C021809.2 Cucumis melo HOM05D000329 ORTHO05D000833 8.9e-10 70.5 206 27.2
AT2G31650 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 1.2e-09 70.1 141 29.8
Cre03.g197700 Chlamydomonas reinhardtii HOM05D000590 ORTHO05D005739 1.2e-09 70.1 137 29.9
A09p67280 Brassica napus HOM05D000590 ORTHO05D005739 1.5e-09 69.7 128 31.2
Duzib177G0926 Durio zibethinus HOM05D000329 ORTHO05D000833 1.5e-09 69.7 141 28.4
Nitab4.5_0001687g0070 Nicotiana tabacum HOM05D000590 ORTHO05D005739 1.5e-09 69.7 136 30.1
Actinidia35907 Actinidia chinensis HOM05D000590 ORTHO05D005739 2.0e-09 69.3 150 32.0
AT1G05830 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 2.0e-09 69.3 129 33.3
Ciclev10018602m.g Citrus clementina HOM05D000590 ORTHO05D005739 2.0e-09 69.3 140 31.4
Pp3c6_7710 Physcomitrium patens HOM05D000590 ORTHO05D005739 2.0e-09 69.3 176 30.7
Sopen09g036190 Solanum pennellii HOM05D000590 ORTHO05D005739 2.0e-09 69.3 138 33.3
GSVIVG01013555001 Vitis vinifera HOM05D000590 ORTHO05D005739 2.0e-09 69.3 148 28.4
BolC8t52685H Brassica oleracea HOM05D000590 ORTHO05D005739 2.6e-09 68.9 128 30.5
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 2.6e-09 68.9 128 30.5
Gohir.A13G167600 Gossypium hirsutum HOM05D000329 ORTHO05D000833 2.6e-09 68.9 132 31.1
Sed0020772 Sechium edule HOM05D000329 ORTHO05D000833 2.6e-09 68.9 153 29.4
Hma1.2p1_0412F.1_g147170 Hydrangea macrophylla HOM05D000590 ORTHO05D005739 3.4e-09 68.6 134 30.6
Sp4g14050 Schrenkiella parvula HOM05D000590 ORTHO05D005739 3.4e-09 68.6 133 31.6
Atru.chr3.1727 Acer truncatum HOM05D000590 ORTHO05D005739 4.4e-09 68.2 149 28.9
AL4G26890 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 4.4e-09 68.2 128 31.2
Gohir.D13G173000 Gossypium hirsutum HOM05D000329 ORTHO05D000833 4.4e-09 68.2 132 30.3
Gorai.013G187600 Gossypium raimondii HOM05D000329 ORTHO05D000833 4.4e-09 68.2 132 30.3
SEGI_09405 Sequoiadendron giganteum HOM05D000329 ORTHO05D000833 4.4e-09 68.2 160 26.9
Solyc09g098260.3 Solanum lycopersicum HOM05D000590 ORTHO05D005739 4.4e-09 68.2 143 30.8
AL1G15760 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 5.8e-09 67.8 128 30.5
Carub.0004s1295 Capsella rubella HOM05D000590 ORTHO05D005739 5.8e-09 67.8 136 30.1
Dinv22650 Davidia involucrata HOM05D000590 ORTHO05D005739 5.8e-09 67.8 150 30.0
Sed0020632 Sechium edule HOM05D000590 ORTHO05D005739 5.8e-09 67.8 159 28.9
unitig_748.g8680 Utricularia gibba HOM05D000329 ORTHO05D000833 5.8e-09 67.8 120 30.0
QL10p044299 Quercus lobata HOM05D000590 ORTHO05D005739 7.5e-09 67.4 171 26.9
Cc02_g08870 Coffea canephora HOM05D000329 ORTHO05D000833 9.8e-09 67.0 134 26.1
Dinv44239 Davidia involucrata HOM05D000590 ORTHO05D005739 9.8e-09 67.0 136 29.4
Pp3c5_20190 Physcomitrium patens HOM05D000590 ORTHO05D005739 9.8e-09 67.0 138 32.6
THA.LOC104800910 Tarenaya hassleriana HOM05D000590 ORTHO05D005739 1.3e-08 66.6 134 30.6
Gohir.D10G130300 Gossypium hirsutum HOM05D000590 ORTHO05D005739 1.7e-08 66.2 147 28.6
Gorai.011G144000 Gossypium raimondii HOM05D000590 ORTHO05D005739 1.7e-08 66.2 147 28.6
Sp1g04640 Schrenkiella parvula HOM05D000590 ORTHO05D005739 2.2e-08 65.9 128 29.7
MSTRG.8225 Avicennia marina HOM05D000329 ORTHO05D000833 2.9e-08 65.5 121 28.9
Migut.F01543 Erythranthe guttata HOM05D000329 ORTHO05D000833 2.9e-08 65.5 121 29.8
Migut.N00443 Erythranthe guttata HOM05D000590 ORTHO05D005739 2.9e-08 65.5 126 31.7
Ah.04g163110 Amaranthus hybridus HOM05D000329 ORTHO05D000833 3.7e-08 65.1 123 28.5
Lj3C343G2 Lonicera japonica HOM05D000590 ORTHO05D005739 3.7e-08 65.1 140 30.0
PGR083G1455 Punica granatum HOM05D000329 ORTHO05D000833 3.7e-08 65.1 123 30.1
QL03p030574 Quercus lobata HOM05D000329 ORTHO05D000833 3.7e-08 65.1 141 27.7
DCAR_023890 Daucus carota HOM05D000590 ORTHO05D005739 4.9e-08 64.7 160 27.5
Migut.M01933 Erythranthe guttata HOM05D000329 ORTHO05D000833 4.9e-08 64.7 112 28.6
Thhalv10006646m.g Eutrema salsugineum HOM05D000590 ORTHO05D005739 4.9e-08 64.7 128 30.5
THA.LOC104812159 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 4.9e-08 64.7 133 28.6
FAN07G2789 Fragaria x ananassa HOM05D000590 ORTHO05D005739 6.4e-08 64.3 143 28.0
Gohir.A10G136500 Gossypium hirsutum HOM05D000590 ORTHO05D005739 6.4e-08 64.3 147 28.6
Aa31LG1G8510 Aethionema arabicum HOM05D000590 ORTHO05D005739 8.3e-08 63.9 127 27.6
Aa31LG5G5330 Aethionema arabicum HOM05D000590 ORTHO05D005739 8.3e-08 63.9 133 27.1
CSS0029067 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D005739 8.3e-08 63.9 135 28.9
CANSAT54G0692 Cannabis sativa HOM05D000329 ORTHO05D000833 8.3e-08 63.9 132 25.8
Prupe.1G177800 Prunus persica HOM05D000590 ORTHO05D005739 8.3e-08 63.9 145 33.1
vmacro03477 Vaccinium macrocarpon HOM05D000329 ORTHO05D000833 8.3e-08 63.9 110 30.9
Haze_11082 Corylus avellana HOM05D000590 ORTHO05D005739 1.1e-07 63.5 143 29.4
Lalb_Chr06g0168561 Lupinus albus HOM05D000329 ORTHO05D000833 1.1e-07 63.5 128 28.9
TAR636G2871 Trochodendron aralioides HOM05D000329 ORTHO05D000833 1.1e-07 63.5 120 30.0
Aa31LG6G2790 Aethionema arabicum HOM05D000329 ORTHO05D000833 1.4e-07 63.2 160 25.6
CARHR227230 Cardamine hirsuta HOM05D000329 ORTHO05D000833 1.4e-07 63.2 145 25.5
CiPaw.08G118300 Carya illinoinensis HOM05D000329 ORTHO05D000833 1.4e-07 63.2 133 26.3
FvH4_4g12210 Fragaria vesca HOM05D000590 ORTHO05D005739 1.4e-07 63.2 143 27.3
HPP92_008119 Vanilla planifolia HOM05D000590 ORTHO05D005739 1.4e-07 63.2 135 31.1
Carub.0001s0518 Capsella rubella HOM05D000590 ORTHO05D005739 1.9e-07 62.8 128 32.8
CARHR005360 Cardamine hirsuta HOM05D000590 ORTHO05D005739 1.9e-07 62.8 128 28.9
ClCG08G003700 Citrullus lanatus HOM05D000590 ORTHO05D005739 1.9e-07 62.8 154 27.3
Manes.04G059300 Manihot esculenta HOM05D000590 ORTHO05D005739 1.9e-07 62.8 143 28.7
Sed0011729 Sechium edule HOM05D000329 ORTHO05D000833 1.9e-07 62.8 172 25.6
TWI63G1778 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 1.9e-07 62.8 150 26.7
RcHm_v2.0_Chr4g0409981 Rosa chinensis HOM05D000590 ORTHO05D005739 2.4e-07 62.4 139 28.8
AT4G20400 Arabidopsis thaliana HOM05D000329 ORTHO05D000833 3.2e-07 62.0 145 24.1
C04p60890 Brassica napus HOM05D000590 ORTHO05D005739 3.2e-07 62.0 125 29.6
MELO3C026117.2 Cucumis melo HOM05D000590 ORTHO05D005739 3.2e-07 62.0 154 27.3
Lalb_Chr02g0149521 Lupinus albus HOM05D000329 ORTHO05D000833 3.2e-07 62.0 137 28.5
Sabra02G0177600 Salix brachista HOM05D000590 ORTHO05D005739 3.2e-07 62.0 138 29.0
THA.LOC104798578 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 3.2e-07 62.0 168 26.2
TAR627G1171 Trochodendron aralioides HOM05D000329 ORTHO05D000833 3.2e-07 62.0 146 26.7
AL7G33490 Arabidopsis lyrata HOM05D000329 ORTHO05D000833 4.1e-07 61.6 135 25.2
arahy.Tifrunner.gnm1.ann1.631JZ3 Arachis hypogaea HOM05D000590 ORTHO05D005739 4.1e-07 61.6 138 29.7
arahy.Tifrunner.gnm1.ann1.NCWU1I Arachis hypogaea HOM05D000590 ORTHO05D005739 4.1e-07 61.6 138 29.7
HanXRQChr04g0116491 Helianthus annuus HOM05D000329 ORTHO05D000833 4.1e-07 61.6 113 28.3
Lalb_Chr17g0336461 Lupinus albus HOM05D000590 ORTHO05D005739 4.1e-07 61.6 150 29.3
Potri.002G232800 Populus trichocarpa HOM05D000590 ORTHO05D005739 4.1e-07 61.6 138 29.0
SMO236G0090 Selaginella moellendorffii HOM05D000590 ORTHO05D005739 4.1e-07 61.6 136 28.7
FAN22G1397 Fragaria x ananassa HOM05D000590 ORTHO05D005739 5.4e-07 61.2 141 27.0
Gohir.D05G111900 Gossypium hirsutum HOM05D000329 ORTHO05D000833 5.4e-07 61.2 122 27.9
Gorai.009G116100 Gossypium raimondii HOM05D000329 ORTHO05D000833 5.4e-07 61.2 122 27.9
PSO541G0434 Papaver somniferum HOM05D000329 ORTHO05D000833 5.4e-07 61.2 108 26.9
TAR362G0932 Trochodendron aralioides HOM05D000590 ORTHO05D005739 5.4e-07 61.2 135 28.9
ATR1098G107 Amborella trichopoda HOM05D000329 ORTHO05D000833 7.0e-07 60.8 210 25.7
ECA236G0498 Erigeron canadensis HOM05D000329 ORTHO05D000833 7.0e-07 60.8 132 27.3
THA.LOC104806238 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 7.0e-07 60.8 149 28.2
Thecc.06G005300 Theobroma cacao HOM05D000329 ORTHO05D000833 7.0e-07 60.8 124 26.6
MSTRG.21982 Avicennia marina HOM05D000590 ORTHO05D005739 9.2e-07 60.5 126 28.6
CAN.G954.21 Capsicum annuum HOM05D000329 ORTHO05D000833 9.2e-07 60.5 120 28.3
CiPaw.01G108600 Carya illinoinensis HOM05D000590 ORTHO05D005739 9.2e-07 60.5 149 27.5
Oeu029902.1 Olea europaea HOM05D000590 ORTHO05D005739 9.2e-07 60.5 134 29.1
Sp7g18765 Schrenkiella parvula HOM05D000329 ORTHO05D000833 9.2e-07 60.5 136 25.0
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 9.2e-07 60.5 134 28.4
Hund06907 Selenicereus undatus HOM05D000329 ORTHO05D000833 9.2e-07 60.5 118 28.8
FAN17G1987 Fragaria x ananassa HOM05D000590 ORTHO05D005739 1.2e-06 60.1 143 26.6
Lsat_1_v5_gn_7_27401 Lactuca sativa HOM05D000329 ORTHO05D000833 1.2e-06 60.1 117 30.8
MBI07_g16915_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D000833 1.2e-06 60.1 121 26.4
Carub.0001s2911 Capsella rubella HOM05D000329 ORTHO05D000833 1.6e-06 59.7 105 29.5
Manes.16G062600 Manihot esculenta HOM05D000329 ORTHO05D000833 1.6e-06 59.7 123 28.5
TWI15G0317 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 1.6e-06 59.7 152 23.0
CsaV3_6G003090 Cucumis sativus L. HOM05D000590 ORTHO05D005739 2.1e-06 59.3 127 28.3
Eucgr.D01031 Eucalyptus grandis HOM05D000329 ORTHO05D000833 2.1e-06 59.3 123 26.8
COL.COLO4_26868 Corchorus olitorius HOM05D000329 ORTHO05D000833 2.7e-06 58.9 119 26.9
TAR626G1105 Trochodendron aralioides HOM05D000329 ORTHO05D000833 2.7e-06 58.9 139 27.3
Dinv11974 Davidia involucrata HOM05D000329 ORTHO05D000833 3.5e-06 58.5 119 26.9
Nitab4.5_0004077g0040 Nicotiana tabacum HOM05D000329 ORTHO05D000833 3.5e-06 58.5 167 25.1
QL05p063086 Quercus lobata HOM05D000329 ORTHO05D000833 4.6e-06 58.2 178 24.7
TWI63G0312 Tripterygium wilfordii HOM05D000590 ORTHO05D005739 4.6e-06 58.2 137 29.9
Aqoxy2G03663 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 6.0e-06 57.8 119 26.9
EL10Ac4g09004 Beta vulgaris HOM05D000329 ORTHO05D000833 6.0e-06 57.8 112 28.6
A08p11030 Brassica napus HOM05D000329 ORTHO05D000833 6.0e-06 57.8 104 30.8
BraA08t33094Z Brassica rapa HOM05D000329 ORTHO05D000833 6.0e-06 57.8 104 30.8
Gorai.011G005400 Gossypium raimondii HOM05D000329 ORTHO05D000833 6.0e-06 57.8 121 27.3
Potri.014G146300 Populus trichocarpa HOM05D000590 ORTHO05D005739 6.0e-06 57.8 159 25.2
BcaB04g18205 Brassica carinata HOM05D000329 ORTHO05D000833 7.8e-06 57.4 104 29.8
MD13G1279000 Malus domestica HOM05D000590 ORTHO05D005739 7.8e-06 57.4 132 29.5
Medtr7g021365 Medicago truncatula HOM05D000590 ORTHO05D005739 7.8e-06 57.4 131 31.3
HPP92_013989 Vanilla planifolia HOM05D000329 ORTHO05D000833 7.8e-06 57.4 119 26.9


User provided reference genes

Program Settings