Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_16160 Physcomitrium patens HOM05D000133 ORTHO05D312192 4.7e-91 337.8 167 100.0
Pp3c27_7010 Physcomitrium patens HOM05D000133 ORTHO05D005913 1.7e-16 90.1 109 48.6
Pp3c27_7020 Physcomitrium patens HOM05D000133 ORTHO05D005913 1.7e-16 90.1 109 48.6
Pp3c16_16040 Physcomitrium patens HOM05D000133 ORTHO05D005913 2.2e-16 89.7 109 48.6
Pp3c6_22090 Physcomitrium patens HOM05D000133 ORTHO05D005913 2.9e-16 89.4 139 41.7
Ca_06489_v3 Cicer arietinum L. HOM05D000133 ORTHO05D005913 6.7e-13 78.2 111 43.2
Eucgr.K01362 Eucalyptus grandis HOM05D000133 ORTHO05D005913 8.8e-13 77.8 107 42.1
Sed0000961 Sechium edule HOM05D000133 ORTHO05D005913 1.2e-12 77.4 107 42.1
Sed0016983 Sechium edule HOM05D000133 ORTHO05D005913 1.2e-12 77.4 107 42.1
Solyc12g011280.2 Solanum lycopersicum HOM05D000133 ORTHO05D005913 1.2e-12 77.4 107 42.1
Sopen12g006610 Solanum pennellii HOM05D000133 ORTHO05D005913 1.2e-12 77.4 107 42.1
HPP92_007488 Vanilla planifolia HOM05D000133 ORTHO05D005913 1.2e-12 77.4 107 43.0
AagrBONN_evm.TU.Sc2ySwM_344.220 Anthoceros agrestis HOM05D000133 ORTHO05D005913 1.5e-12 77.0 133 39.1
CSS0016271 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D005913 1.5e-12 77.0 107 40.2
MD09G1134800 Malus domestica HOM05D000133 ORTHO05D005913 1.5e-12 77.0 107 41.1
Aqoxy4G02271 Aquilegia oxysepala HOM05D000133 ORTHO05D005913 2.0e-12 76.6 107 41.1
CSS0018005 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D005913 2.0e-12 76.6 107 40.2
CiPaw.04G198400 Carya illinoinensis HOM05D000133 ORTHO05D005913 2.0e-12 76.6 107 42.1
Os02g0197600 Oryza sativa ssp. japonica HOM05D000133 ORTHO05D005913 2.0e-12 76.6 121 39.7
CAN.G904.8 Capsicum annuum HOM05D000133 ORTHO05D005913 2.6e-12 76.3 107 41.1
Nitab4.5_0002209g0120 Nicotiana tabacum HOM05D000133 ORTHO05D005913 2.6e-12 76.3 107 42.1
TPR.G35887 Trifolium pratense HOM05D000133 ORTHO05D005913 2.6e-12 76.3 111 40.5
Cpa.g.sc8.5 Carica papaya HOM05D000133 ORTHO05D005913 3.3e-12 75.9 107 42.1
COL.COLO4_24668 Corchorus olitorius HOM05D000133 ORTHO05D005913 3.3e-12 75.9 107 41.1
Duzib138G0424 Durio zibethinus HOM05D000133 ORTHO05D005913 3.3e-12 75.9 107 41.1
Oeu001314.2 Olea europaea HOM05D000133 ORTHO05D005913 3.3e-12 75.9 107 41.1
Phvul.008G289700 Phaseolus vulgaris HOM05D000133 ORTHO05D005913 3.3e-12 75.9 107 43.0
PGR044G1423 Punica granatum HOM05D000133 ORTHO05D005913 3.3e-12 75.9 107 41.1
SGA_v2.0_scaffold70G23593 Striga asiatica HOM05D000133 ORTHO05D005913 3.3e-12 75.9 107 42.1
Thecc.01G203200 Theobroma cacao HOM05D000133 ORTHO05D005913 3.3e-12 75.9 107 41.1
ATR0751G072 Amborella trichopoda HOM05D000133 ORTHO05D005913 4.4e-12 75.5 107 41.1
Prupe.3G191900 Prunus persica HOM05D000133 ORTHO05D005913 4.4e-12 75.5 107 40.2
SalBow8G3705 Salvia bowleyana HOM05D000133 ORTHO05D005913 4.4e-12 75.5 107 41.1
ClCG03G012070 Citrullus lanatus HOM05D000133 ORTHO05D005913 7.5e-12 74.7 107 40.2
Psat2g001880 Pisum sativum HOM05D000133 ORTHO05D005913 7.5e-12 74.7 111 40.5
TWI36G0015 Tripterygium wilfordii HOM05D000133 ORTHO05D005913 7.5e-12 74.7 107 40.2
Dinv26632 Davidia involucrata HOM05D000133 ORTHO05D005913 9.7e-12 74.3 107 41.1
FAN09G0576 Fragaria x ananassa HOM05D000133 ORTHO05D005913 9.7e-12 74.3 107 40.2
Medtr5g098780 Medicago truncatula HOM05D000133 ORTHO05D005913 9.7e-12 74.3 111 39.6
Sc15g0007360 Simmondsia chinensis HOM05D000133 ORTHO05D005913 9.7e-12 74.3 107 43.0
PGSC0003DMG400007787 Solanum tuberosum HOM05D000133 ORTHO05D005913 9.7e-12 74.3 107 41.1
Atru.chr7.2486 Acer truncatum HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 41.1
arahy.Tifrunner.gnm1.ann1.66SDN0 Arachis hypogaea HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 42.1
arahy.Tifrunner.gnm1.ann1.86F2TK Arachis hypogaea HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 42.1
Cfa008711 Carpinus fangiana HOM05D000133 ORTHO05D005913 1.3e-11 73.9 104 41.3
Cc05_g09930 Coffea canephora HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 40.2
MELO3C015076.2 Cucumis melo HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 40.2
Migut.H02086 Erythranthe guttata HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 41.1
Nn1g07621 Nelumbo nucifera HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 41.1
PGSC0003DMG400021287 Solanum tuberosum HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 41.1
TAR629G1173 Trochodendron aralioides HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 40.2
VMungo0647G2022 Vigna mungo HOM05D000133 ORTHO05D005913 1.3e-11 73.9 107 41.1
Ciclev10002129m.g Citrus clementina HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 41.1
FvH4_6g40150 Fragaria vesca HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 39.3
FAN02G1550 Fragaria x ananassa HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 39.3
FAN05G0079 Fragaria x ananassa HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 39.3
FAN14G2474 Fragaria x ananassa HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 39.3
Glyma.02G309500 Glycine max HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 41.1
Glyma.14G003400 Glycine max HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 41.1
QL04p065502 Quercus lobata HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 40.2
Sabra14G0132000 Salix brachista HOM05D000133 ORTHO05D005913 1.7e-11 73.6 107 40.2
Ah.00g000900 Amaranthus hybridus HOM05D000133 ORTHO05D005913 2.2e-11 73.2 107 40.2
CsaV3_1G043710 Cucumis sativus L. HOM05D000133 ORTHO05D005913 2.2e-11 73.2 107 39.3
Gohir.A11G146500 Gossypium hirsutum HOM05D000133 ORTHO05D005913 2.2e-11 73.2 107 41.1
MSTRG.15022 Avicennia marina HOM05D000133 ORTHO05D005913 2.8e-11 72.8 107 40.2
MD17G1123800 Malus domestica HOM05D000133 ORTHO05D005913 2.8e-11 72.8 107 40.2
Hund01775 Selenicereus undatus HOM05D000133 ORTHO05D005913 2.8e-11 72.8 107 40.2
TWI36G0025 Tripterygium wilfordii HOM05D000133 ORTHO05D005913 2.8e-11 72.8 133 36.1
vmacro09452 Vaccinium macrocarpon HOM05D000133 ORTHO05D005913 2.8e-11 72.8 104 41.3
Lsat_1_v5_gn_7_99221 Lactuca sativa HOM05D000133 ORTHO05D005913 3.7e-11 72.4 107 39.3
Mapoly0066s0050 Marchantia polymorpha HOM05D000133 ORTHO05D005913 4.8e-11 72.0 119 37.0
Medtr5g098785 Medicago truncatula HOM05D000133 ORTHO05D005913 4.8e-11 72.0 111 38.7
Rhsim04G0032000 Rhododendron simsii HOM05D000133 ORTHO05D005913 4.8e-11 72.0 104 41.3
RcHm_v2.0_Chr2g0155141 Rosa chinensis HOM05D000133 ORTHO05D005913 4.8e-11 72.0 107 39.3
Solyc10g007690.3 Solanum lycopersicum HOM05D000133 ORTHO05D005913 4.8e-11 72.0 107 40.2
Sopen10g003600 Solanum pennellii HOM05D000133 ORTHO05D005913 4.8e-11 72.0 107 40.2
AL2G14790 Arabidopsis lyrata HOM05D000133 ORTHO05D005913 6.3e-11 71.6 107 39.3
ECA240G4804 Erigeron canadensis HOM05D000133 ORTHO05D005913 6.3e-11 71.6 107 39.3
Manes.13G058600 Manihot esculenta HOM05D000133 ORTHO05D005913 6.3e-11 71.6 107 40.2
Peaxi162Scf00035g02214 Petunia axillaris HOM05D000133 ORTHO05D005913 6.3e-11 71.6 107 40.2
SalBow6G0531 Salvia bowleyana HOM05D000133 ORTHO05D005913 6.3e-11 71.6 107 39.3
SEGI_24757 Sequoiadendron giganteum HOM05D000133 ORTHO05D005913 6.3e-11 71.6 104 40.4
Gohir.D11G152600 Gossypium hirsutum HOM05D000133 ORTHO05D005913 8.2e-11 71.2 107 40.2
Lj1g0028151 Lotus japonicus HOM05D000133 ORTHO05D005913 8.2e-11 71.2 107 41.1
Lalb_Chr17g0349341 Lupinus albus HOM05D000133 ORTHO05D005913 8.2e-11 71.2 107 40.2
Nitab4.5_0000505g0080 Nicotiana tabacum HOM05D000133 ORTHO05D005913 8.2e-11 71.2 107 40.2
Nitab4.5_0000639g0230 Nicotiana tabacum HOM05D000133 ORTHO05D005913 8.2e-11 71.2 107 40.2
PSO782G2350 Papaver somniferum HOM05D000133 ORTHO05D005913 8.2e-11 71.2 107 38.3
MBI15_g35997_MAGBIO Magnolia biondii HOM05D000133 ORTHO05D005913 1.1e-10 70.9 104 41.3
Potri.014G172400 Populus trichocarpa HOM05D000133 ORTHO05D005913 1.1e-10 70.9 104 40.4
THA.LOC104822450 Tarenaya hassleriana HOM05D000133 ORTHO05D005913 1.1e-10 70.9 107 39.3
THA.LOC104819019 Tarenaya hassleriana HOM05D000133 ORTHO05D005913 1.4e-10 70.5 131 35.9
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 1.8e-10 70.1 107 38.3
Peaxi162Scf00000g00601 Petunia axillaris HOM05D000133 ORTHO05D005913 1.8e-10 70.1 107 39.3
CANSAT54G1187 Cannabis sativa HOM05D000133 ORTHO05D005913 2.4e-10 69.7 108 39.8
HanXRQChr11g0329811 Helianthus annuus HOM05D000133 ORTHO05D005913 2.4e-10 69.7 107 39.3
Aa31LG5G18150 Aethionema arabicum HOM05D000133 ORTHO05D005913 3.1e-10 69.3 107 39.3
Carub.0002s0371 Capsella rubella HOM05D000133 ORTHO05D005913 3.1e-10 69.3 107 38.3
CARHR050920 Cardamine hirsuta HOM05D000133 ORTHO05D005913 3.1e-10 69.3 107 38.3
AUR62036844 Chenopodium quinoa HOM05D000133 ORTHO05D005913 3.1e-10 69.3 106 40.6
Thhalv10023636m.g Eutrema salsugineum HOM05D000133 ORTHO05D005913 3.1e-10 69.3 107 38.3
AUR62040811 Chenopodium quinoa HOM05D000133 ORTHO05D005913 4.1e-10 68.9 106 40.6
AT1G61520 Arabidopsis thaliana HOM05D000133 ORTHO05D005913 5.3e-10 68.6 107 38.3
BcaB07g31277 Brassica carinata HOM05D000133 ORTHO05D005913 5.3e-10 68.6 107 38.3
BcaC04g22329 Brassica carinata HOM05D000133 ORTHO05D005913 5.3e-10 68.6 107 38.3
A09p16770 Brassica napus HOM05D000133 ORTHO05D005913 5.3e-10 68.6 107 38.3
C09p20530 Brassica napus HOM05D000133 ORTHO05D005913 5.3e-10 68.6 107 38.3
BolC9t54959H Brassica oleracea HOM05D000133 ORTHO05D005913 5.3e-10 68.6 107 38.3
BraA09t37314Z Brassica rapa HOM05D000133 ORTHO05D005913 5.3e-10 68.6 107 38.3
HanXRQChr15g0492411 Helianthus annuus HOM05D000133 ORTHO05D005913 5.3e-10 68.6 107 38.3
Actinidia18816 Actinidia chinensis HOM05D000133 ORTHO05D005913 7.0e-10 68.2 107 39.3
PSO063G6234 Papaver somniferum HOM05D000133 ORTHO05D005913 7.0e-10 68.2 107 37.4
BcaB04g20336 Brassica carinata HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
BcaC02g10573 Brassica carinata HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
BcaC06g31846 Brassica carinata HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
A01p30240 Brassica napus HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
C01p38380 Brassica napus HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
C04p27340 Brassica napus HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
BolC1t03805H Brassica oleracea HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
BolC4t24267H Brassica oleracea HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
BraA01t03159Z Brassica rapa HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
Sp2g03060 Schrenkiella parvula HOM05D000133 ORTHO05D005913 1.2e-09 67.4 107 37.4
EL10Ac1g01941 Beta vulgaris HOM05D000133 ORTHO05D005913 2.0e-09 66.6 143 34.3
SMO348G0006 Selaginella moellendorffii HOM05D000133 ORTHO05D005913 2.7e-09 66.2 106 36.8
ECA236G4519 Erigeron canadensis HOM05D000133 ORTHO05D005913 7.7e-09 64.7 104 38.5
A03p66910 Brassica napus HOM05D000133 ORTHO05D005913 1.0e-08 64.3 107 36.4
BraA01t02788Z Brassica rapa HOM05D000133 ORTHO05D005913 1.0e-08 64.3 107 36.4
Haze_12562 Corylus avellana HOM05D000133 ORTHO05D005913 1.1e-07 60.8 116 35.3
Oeu020032.1 Olea europaea HOM05D000133 ORTHO05D005913 3.2e-07 59.3 136 33.8
GSVIVG01019377001 Vitis vinifera HOM05D000133 ORTHO05D005913 9.4e-07 57.8 41 65.9
CDE03G0077 Ceratophyllum demersum HOM05D000133 ORTHO05D005913 1.2e-06 57.4 53 52.8
MCO09G630 Micromonas commoda HOM05D000133 ORTHO05D005913 1.6e-06 57.0 98 34.7
unitig_62.g23094 Utricularia gibba HOM05D000133 ORTHO05D005913 2.7e-06 56.2 41 63.4
PRCOL_00003242 Prasinoderma coloniale HOM05D000133 ORTHO05D005913 3.6e-06 55.8 108 35.2


User provided reference genes

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