Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.2e-48 196.4 117 100.0
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 4.7e-45 184.5 116 86.2
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 1.5e-38 162.9 116 81.9
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 9.5e-38 160.2 116 82.8
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 2.8e-37 158.7 116 77.6
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 4.7e-37 157.9 116 81.0
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 8.0e-37 157.1 116 81.0
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 1.0e-36 156.8 116 80.2
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.4e-36 156.4 116 81.0
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 1.4e-36 156.4 116 80.2
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 1.4e-36 156.4 116 80.2
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 1.4e-36 156.4 116 80.2
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 1.4e-36 156.4 116 81.9
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 1.4e-36 156.4 116 81.9
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.4e-36 156.4 116 80.2
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 1.4e-36 156.4 116 81.0
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 2.3e-36 155.6 116 81.0
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 2.3e-36 155.6 116 81.0
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 79.3
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 79.3
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 80.2
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 79.3
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 80.2
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 80.2
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 79.3
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 81.0
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 79.3
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 3.0e-36 155.2 116 80.2
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 4.0e-36 154.8 116 79.3
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 4.0e-36 154.8 116 79.3
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 5.2e-36 154.5 116 78.4
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 5.2e-36 154.5 116 78.4
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 5.2e-36 154.5 116 81.0
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 78.4
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 75.9
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 75.9
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 6.8e-36 154.1 116 78.4
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 78.4
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 75.9
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 78.4
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 78.4
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 78.4
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 75.9
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 8.9e-36 153.7 116 78.4
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 8.9e-36 153.7 116 78.4
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 8.9e-36 153.7 116 75.9
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 8.9e-36 153.7 116 76.7
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 1.2e-35 153.3 116 78.4
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 1.5e-35 152.9 114 74.6
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 2.0e-35 152.5 116 77.6
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 2.0e-35 152.5 116 77.6
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 2.0e-35 152.5 116 77.6
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 2.0e-35 152.5 116 77.6
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 2.6e-35 152.1 116 77.6
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 2.6e-35 152.1 116 77.6
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 2.6e-35 152.1 116 77.6
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 5.7e-35 151.0 116 75.0
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 7.5e-35 150.6 116 77.6
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 7.5e-35 150.6 116 77.6
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 2.2e-34 149.1 116 78.4
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 3.7e-34 148.3 114 78.9
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 4.9e-34 147.9 116 80.2
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 6.3e-34 147.5 116 70.7
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.8e-33 146.0 114 79.8
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 2.4e-33 145.6 116 75.9
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 4.1e-33 144.8 116 77.6
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 5.4e-33 144.4 116 74.1
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 7.0e-33 144.1 116 75.0
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 9.2e-33 143.7 116 75.0
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 9.2e-33 143.7 116 75.0
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.2e-32 143.3 116 74.1
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 1.6e-32 142.9 116 72.4
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 1.6e-32 142.9 116 72.4
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 1.6e-32 142.9 116 74.1
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 2.0e-32 142.5 116 74.1
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 2.0e-32 142.5 116 74.1
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 2.0e-32 142.5 116 74.1
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.7e-32 142.1 116 72.4
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 3.5e-32 141.7 116 74.1
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 4.5e-32 141.4 116 71.6
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 5.9e-32 141.0 116 73.3
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 7.8e-32 140.6 116 74.1
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 1.0e-31 140.2 116 74.1
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 1.3e-31 139.8 116 73.3
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 1.3e-31 139.8 116 73.3
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 1.3e-31 139.8 116 73.3
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 1.7e-31 139.4 116 72.4
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 2.3e-31 139.0 116 72.4
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 2.3e-31 139.0 116 72.4
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 6.6e-31 137.5 116 71.6
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 6.6e-31 137.5 116 71.6
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.1e-30 136.7 116 75.9
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 3.3e-30 135.2 148 54.7
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 7.3e-30 134.0 116 69.8
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 8.9e-28 127.1 116 73.3
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 6.4e-26 120.9 99 74.7
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.9e-25 119.4 101 72.3
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 5.4e-25 117.9 106 69.8
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 1.2e-24 116.7 116 69.8
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 3.5e-24 115.2 100 75.0
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 1.0e-23 113.6 102 70.6
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 3.0e-23 112.1 102 68.6
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 6.6e-23 110.9 99 70.7
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 8.6e-23 110.5 90 75.6
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 4.3e-22 108.2 99 69.7
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 9.5e-22 107.1 90 73.3
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 2.0e-19 99.4 116 52.6
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 2.6e-19 99.0 84 71.4
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 3.7e-18 95.1 90 65.6
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 3.2e-17 92.0 52 88.5
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 3.2e-17 92.0 52 88.5
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 3.2e-17 92.0 52 88.5
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 7.0e-17 90.9 52 86.5
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 6.0e-16 87.8 97 54.6
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 1.3e-15 86.7 52 82.7
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 8.6e-15 84.0 54 79.6
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 2.5e-14 82.4 117 42.7
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 2.5e-14 82.4 54 77.8
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 3.3e-14 82.0 54 77.8
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 4.3e-14 81.6 117 44.4
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 7.3e-14 80.9 54 75.9
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 7.3e-14 80.9 54 75.9
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.2e-13 80.1 54 74.1
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.1e-13 79.3 54 75.9
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.1e-12 77.0 54 72.2
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 1.9e-09 66.2 54 66.7
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 3.2e-09 65.5 94 55.3
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 6.0e-08 61.2 45 68.9
Pp3c5_11560 Physcomitrium patens HOM05D000443 ORTHO05D317036 1.1e-06 57.0 48 56.2


User provided reference genes

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