Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.9e-232 808.1 391 100.0
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 2.0e-124 449.9 330 60.0
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 4.4e-124 448.7 336 60.4
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 2.2e-123 446.4 339 63.4
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.4e-122 443.7 330 60.6
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 1.9e-122 443.4 334 62.3
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 2.4e-122 443.0 330 60.0
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 3.2e-122 442.6 330 60.9
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 3.2e-122 442.6 373 60.3
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 7.1e-122 441.4 330 60.0
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.6e-121 440.3 330 59.1
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 1.6e-121 440.3 331 60.1
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.7e-121 439.5 330 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 4.6e-121 438.7 333 61.9
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 4.6e-121 438.7 334 59.6
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 6.0e-121 438.3 330 60.0
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 7.9e-121 438.0 330 59.1
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.3e-120 437.2 330 59.4
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.3e-120 437.2 340 57.9
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.7e-120 436.8 330 59.4
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 6.6e-120 434.9 334 59.0
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 6.6e-120 434.9 330 58.8
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.1e-119 434.1 340 57.4
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.9e-119 433.3 330 60.0
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 1.9e-119 433.3 330 58.5
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 1.9e-119 433.3 334 59.0
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 3.3e-119 432.6 334 59.0
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 3.3e-119 432.6 330 58.8
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 3.3e-119 432.6 330 58.8
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 4.3e-119 432.2 330 59.1
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 4.3e-119 432.2 330 58.5
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 5.6e-119 431.8 334 58.7
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 7.4e-119 431.4 334 58.4
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 7.4e-119 431.4 332 59.0
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 7.4e-119 431.4 341 57.2
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 7.4e-119 431.4 331 59.2
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 9.6e-119 431.0 337 58.5
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 1.3e-118 430.6 331 58.9
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.3e-118 430.6 338 57.7
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 1.6e-118 430.3 334 58.1
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 1.6e-118 430.3 328 58.8
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 2.1e-118 429.9 330 58.5
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 2.8e-118 429.5 330 59.1
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 2.8e-118 429.5 331 59.8
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 3.6e-118 429.1 330 59.4
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 4.8e-118 428.7 330 59.4
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 6.2e-118 428.3 331 58.6
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 8.1e-118 427.9 330 59.1
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 8.1e-118 427.9 355 56.3
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 8.1e-118 427.9 355 56.3
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.1e-117 427.6 330 58.2
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.1e-117 427.6 331 58.0
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 1.4e-117 427.2 331 58.9
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 1.4e-117 427.2 377 53.3
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 1.8e-117 426.8 340 56.8
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 6.9e-117 424.9 330 58.2
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 1.2e-116 424.1 355 55.8
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.2e-116 424.1 338 58.3
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.5e-116 423.7 330 58.8
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.5e-116 423.7 330 59.1
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.5e-116 423.7 330 58.5
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.0e-116 423.3 361 54.6
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 2.6e-116 422.9 330 57.3
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 3.4e-116 422.5 344 56.4
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 9.9e-116 421.0 350 56.0
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 9.9e-116 421.0 341 55.7
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 1.3e-115 420.6 330 58.5
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.1e-114 417.5 393 50.9
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.4e-114 417.2 330 57.0
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 1.4e-114 417.2 330 57.3
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 3.2e-114 416.0 330 57.0
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 3.2e-114 416.0 360 53.6
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 4.2e-114 415.6 339 58.1
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 1.6e-113 413.7 331 58.0
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 6.0e-113 411.8 349 53.9
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.8e-112 410.2 371 52.6
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 8.7e-112 407.9 330 56.7
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 1.9e-111 406.8 302 58.9
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 3.3e-111 406.0 401 49.9
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 7.4e-111 404.8 312 58.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.6e-110 403.7 347 53.6
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.6e-110 403.7 380 50.8
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 2.4e-109 399.8 305 58.7
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.6e-108 394.8 361 51.8
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.3e-107 394.0 309 59.5
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 3.8e-107 392.5 337 54.0
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 2.1e-105 386.7 293 59.4
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 3.3e-103 379.4 330 53.9
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 9.6e-103 377.9 344 53.2
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.3e-102 377.5 285 60.0
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.5e-100 370.5 340 51.8
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 6.5e-99 365.2 365 49.9
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.7e-97 359.8 352 49.1
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 7.4e-95 351.7 337 51.6
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 2.2e-94 350.1 364 48.6
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.0e-91 341.3 354 48.3
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 3.8e-91 339.3 330 50.9
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.2e-89 334.3 330 49.1
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 4.6e-89 332.4 298 52.7
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.2e-86 323.6 360 46.1
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 2.6e-79 300.1 351 46.2
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 3.3e-79 299.7 272 52.9
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 6.1e-73 278.9 228 55.7
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 1.4e-69 267.7 367 42.0
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 2.7e-68 263.5 181 65.7
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 3.5e-68 263.1 181 65.7
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 6.1e-65 252.3 181 63.0
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 6.1e-65 252.3 181 62.4
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 2.0e-63 247.3 310 43.9
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 5.9e-60 235.7 177 59.9
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.4e-53 213.8 231 45.0
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.2e-49 201.4 198 48.0
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 3.4e-47 193.4 167 55.7
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.0e-44 184.1 132 64.4
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.9e-44 182.6 346 37.0
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 1.1e-42 178.3 147 53.7
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 1.1e-42 178.3 147 53.7
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 9.5e-42 175.3 132 60.6
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 4.6e-36 156.4 320 33.1
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.0e-35 155.2 132 53.0
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.7e-35 154.5 139 51.1
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 9.5e-34 148.7 108 63.0
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 8.9e-32 142.1 92 65.2
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.1e-29 135.2 365 30.1
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 1.5e-23 114.8 78 59.0
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 1.4e-21 108.2 77 58.4
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.7e-14 84.7 56 58.9


User provided reference genes

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