Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 8.0e-58 226.9 114 100.0
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.2e-32 143.3 124 62.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 5.1e-28 127.9 96 69.8
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 4.0e-17 91.7 64 67.2
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 9.0e-17 90.5 102 50.0
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 9.0e-17 90.5 65 66.2
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 9.0e-17 90.5 65 64.6
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.2e-16 90.1 102 49.0
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.5e-16 89.7 68 63.2
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.0e-16 89.4 65 66.2
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.0e-16 89.4 92 55.4
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.6e-16 89.0 65 64.6
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.6e-16 89.0 65 66.2
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.6e-16 89.0 65 64.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 4.5e-16 88.2 102 49.0
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 5.8e-16 87.8 95 50.5
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 5.8e-16 87.8 102 48.0
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 5.8e-16 87.8 60 70.0
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 7.6e-16 87.4 65 63.1
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 7.6e-16 87.4 76 59.2
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 9.9e-16 87.0 65 64.6
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 9.9e-16 87.0 65 64.6
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 9.9e-16 87.0 65 64.6
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-15 86.7 65 63.1
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-15 86.7 65 63.1
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.3e-15 86.7 65 63.1
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.3e-15 86.7 69 63.8
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.3e-15 86.7 77 59.7
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.3e-15 86.7 77 59.7
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.3e-15 86.7 65 66.2
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.3e-15 86.7 65 66.2
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.3e-15 86.7 65 66.2
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.3e-15 86.7 65 66.2
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.3e-15 86.7 65 63.1
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.7e-15 86.3 62 67.7
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.7e-15 86.3 67 61.2
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.7e-15 86.3 76 59.2
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.7e-15 86.3 77 59.7
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.2e-15 85.9 65 61.5
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 2.2e-15 85.9 65 61.5
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.2e-15 85.9 102 48.0
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 2.9e-15 85.5 67 62.7
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 2.9e-15 85.5 65 61.5
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 2.9e-15 85.5 65 60.0
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 3.8e-15 85.1 83 55.4
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 3.8e-15 85.1 65 61.5
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 3.8e-15 85.1 93 49.5
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 3.8e-15 85.1 75 60.0
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 3.8e-15 85.1 67 64.2
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 3.8e-15 85.1 69 62.3
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 3.8e-15 85.1 65 61.5
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 4.9e-15 84.7 67 61.2
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 4.9e-15 84.7 67 61.2
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 6.4e-15 84.3 84 53.6
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 8.4e-15 84.0 67 61.2
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 8.4e-15 84.0 65 60.0
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 8.4e-15 84.0 83 54.2
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 8.4e-15 84.0 65 61.5
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 8.4e-15 84.0 65 61.5
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-14 83.6 65 61.5
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.1e-14 83.6 70 61.4
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.1e-14 83.6 57 70.2
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.1e-14 83.6 62 66.1
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.4e-14 83.2 68 63.2
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.4e-14 83.2 65 64.6
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.4e-14 83.2 57 68.4
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.4e-14 83.2 65 60.0
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.4e-14 83.2 61 65.6
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.9e-14 82.8 65 61.5
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.9e-14 82.8 65 61.5
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.9e-14 82.8 73 56.2
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.9e-14 82.8 65 60.0
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.9e-14 82.8 57 66.7
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.9e-14 82.8 70 55.7
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 1.9e-14 82.8 63 65.1
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.4e-14 82.4 65 61.5
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 2.4e-14 82.4 74 56.8
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 2.4e-14 82.4 63 63.5
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 3.2e-14 82.0 61 63.9
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.2e-14 82.0 91 46.2
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.2e-14 81.6 61 63.9
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 4.2e-14 81.6 68 58.8
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 4.2e-14 81.6 68 58.8
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 4.2e-14 81.6 59 66.1
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 4.2e-14 81.6 68 57.4
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 4.2e-14 81.6 65 58.5
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 4.2e-14 81.6 65 60.0
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.4e-14 81.3 62 62.9
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 5.4e-14 81.3 68 58.8
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 5.4e-14 81.3 65 60.0
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 5.4e-14 81.3 88 46.6
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 7.1e-14 80.9 65 58.5
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 7.1e-14 80.9 65 60.0
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 7.1e-14 80.9 83 49.4
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.2e-13 80.1 68 57.4
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.6e-13 79.7 68 57.4
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.6e-13 79.7 56 67.9
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 2.1e-13 79.3 61 60.7
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.1e-13 79.3 72 56.9
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.7e-13 79.0 97 45.4
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 2.7e-13 79.0 67 58.2
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-13 79.0 67 58.2
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.7e-13 79.0 65 60.0
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.7e-13 79.0 63 60.3
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 2.7e-13 79.0 84 51.2
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.7e-13 79.0 65 56.9
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.5e-13 78.6 65 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.5e-13 78.6 69 60.9
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 3.5e-13 78.6 56 67.9
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 3.5e-13 78.6 56 67.9
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 4.6e-13 78.2 96 45.8
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.6e-13 78.2 65 55.4
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.6e-13 78.2 83 51.8
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 6.0e-13 77.8 59 62.7
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 7.9e-13 77.4 61 60.7
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 7.9e-13 77.4 92 46.7
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 1.0e-12 77.0 78 51.3
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.0e-12 77.0 65 56.9
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.0e-12 77.0 65 56.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 1.0e-12 77.0 61 60.7
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.0e-12 77.0 87 49.4
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.8e-12 76.3 61 60.7
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.8e-12 76.3 51 68.6
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.3e-12 75.9 75 53.3
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.3e-12 75.9 55 67.3
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 2.3e-12 75.9 62 58.1
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 3.0e-12 75.5 76 53.9
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 5.1e-12 74.7 51 66.7
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.7e-12 74.3 64 57.8
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.7e-12 73.9 67 53.7
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 8.7e-12 73.9 78 52.6
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 8.7e-12 73.9 78 52.6
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.1e-11 73.6 55 61.8
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.1e-11 73.6 60 56.7
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.5e-11 73.2 65 56.9
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.9e-11 72.8 61 62.3
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.3e-11 72.0 51 64.7
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.3e-11 71.6 63 55.6
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 7.4e-11 70.9 61 55.7
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 9.6e-11 70.5 115 40.0
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.3e-10 70.1 51 62.7
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 8.1e-10 67.4 89 41.6
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 8.1e-10 67.4 71 52.1
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.4e-09 66.6 72 48.6
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.4e-09 66.6 62 51.6
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.1e-09 65.5 58 53.4
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 4.0e-09 65.1 62 53.2
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.0e-09 65.1 50 60.0
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 9.0e-09 63.9 65 46.2
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.5e-08 63.2 52 55.8
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 7.6e-08 60.8 57 54.4
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.9e-07 58.9 60 45.0


User provided reference genes

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