Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.2e-138 496.5 242 100.0
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.1e-117 426.8 242 84.7
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 9.9e-82 307.4 216 65.3
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 6.0e-71 271.6 212 59.4
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.3e-70 269.6 214 58.4
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.3e-68 263.8 208 56.7
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 1.6e-68 263.5 208 56.7
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.6e-68 263.5 208 57.2
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.6e-68 263.5 227 52.9
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.6e-68 263.5 211 59.2
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 3.7e-68 262.3 210 57.1
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 4.8e-68 261.9 212 57.5
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.8e-68 261.9 208 56.2
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 6.2e-68 261.5 208 57.2
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 5.3e-67 258.5 211 57.8
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 6.9e-67 258.1 210 56.2
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 6.9e-67 258.1 212 56.1
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.2e-66 257.3 212 56.1
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.2e-66 257.3 219 54.3
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.2e-66 257.3 211 55.5
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.2e-66 257.3 214 55.1
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.0e-66 256.5 214 56.1
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 2.6e-66 256.1 208 57.7
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 3.4e-66 255.8 214 55.6
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 5.8e-66 255.0 212 56.1
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 5.8e-66 255.0 212 55.7
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.3e-65 253.8 211 55.5
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.7e-65 253.4 211 56.4
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 2.2e-65 253.1 211 54.5
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 3.8e-65 252.3 211 55.9
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 3.8e-65 252.3 211 54.5
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 8.4e-65 251.1 212 55.2
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.1e-64 250.8 210 56.2
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.1e-64 250.8 214 56.5
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 1.4e-64 250.4 211 55.0
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.9e-64 250.0 211 55.0
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 1.9e-64 250.0 211 54.5
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 1.9e-64 250.0 210 57.6
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.9e-64 250.0 212 56.1
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 2.5e-64 249.6 211 55.9
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 2.5e-64 249.6 229 52.4
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 4.2e-64 248.8 214 54.7
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 4.2e-64 248.8 215 54.9
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 5.5e-64 248.4 212 54.2
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 5.5e-64 248.4 212 54.2
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 5.5e-64 248.4 212 54.2
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 5.5e-64 248.4 212 54.7
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 9.3e-64 247.7 224 53.1
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.2e-63 247.3 212 54.2
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.6e-63 246.9 212 54.2
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.7e-63 246.1 211 53.6
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 3.5e-63 245.7 212 53.8
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 3.5e-63 245.7 212 53.8
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 4.6e-63 245.4 223 52.0
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 6.0e-63 245.0 211 53.6
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 2.3e-62 243.0 211 54.0
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 3.0e-62 242.7 212 53.8
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 3.0e-62 242.7 215 53.5
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 3.9e-62 242.3 212 53.8
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 8.7e-62 241.1 225 52.0
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 1.9e-61 240.0 211 53.6
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 2.5e-61 239.6 201 53.2
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 3.3e-61 239.2 212 53.8
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 5.7e-61 238.4 211 52.6
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 5.7e-61 238.4 217 54.4
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 5.7e-61 238.4 217 54.4
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 9.6e-61 237.7 213 50.2
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.6e-60 236.9 211 53.1
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.6e-60 236.9 223 52.5
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.1e-60 236.5 211 53.6
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 3.1e-59 232.6 214 49.5
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 5.3e-59 231.9 214 50.0
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 6.9e-59 231.5 211 52.1
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.2e-58 230.7 212 51.4
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.6e-58 229.6 212 51.4
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 2.6e-58 229.6 211 52.6
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 3.4e-58 229.2 211 54.0
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 3.4e-58 229.2 211 54.0
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 3.4e-58 229.2 211 54.0
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 3.4e-58 229.2 211 54.0
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 3.4e-58 229.2 211 54.0
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.7e-57 226.9 212 50.5
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 3.8e-57 225.7 212 50.0
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.6e-55 220.3 212 50.5
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.6e-55 220.3 212 50.5
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 6.1e-55 218.4 174 57.5
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.0e-54 217.6 212 48.6
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.3e-54 216.5 211 49.8
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.0e-54 216.1 212 48.6
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 3.9e-54 215.7 218 48.6
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.9e-54 215.7 212 48.1
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 3.9e-54 215.7 164 60.4
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 5.1e-54 215.3 211 48.8
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.3e-53 212.6 211 50.2
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 4.3e-53 212.2 217 48.4
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 5.7e-53 211.8 215 47.4
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 5.7e-53 211.8 210 49.0
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.3e-52 210.7 211 50.2
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 4.8e-52 208.8 214 48.6
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.8e-51 206.8 210 48.1
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 1.2e-50 204.1 212 48.6
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.5e-50 203.8 211 48.8
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.6e-50 203.0 211 47.9
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 3.4e-50 202.6 212 46.2
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 3.4e-50 202.6 213 46.9
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 3.4e-50 202.6 213 46.9
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.0e-49 201.1 212 46.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 1.3e-49 200.7 210 47.1
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 1.3e-49 200.7 211 48.3
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 2.5e-48 196.4 212 47.6
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 3.2e-48 196.1 212 45.8
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 3.2e-48 196.1 212 45.8
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.2e-48 195.7 211 47.4
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 5.5e-48 195.3 213 46.0
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.6e-47 193.7 223 45.3
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 2.1e-47 193.4 209 46.9
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.0e-46 191.0 211 46.0
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.8e-46 190.3 210 46.7
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 1.8e-46 190.3 210 47.1
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 4.3e-45 185.7 163 50.9
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.0e-42 176.8 165 49.7
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.7e-41 173.7 166 53.0
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.2e-41 173.3 164 49.4
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.5e-40 168.7 160 53.8
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 1.6e-39 167.2 213 41.8
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.8e-38 163.7 125 62.4
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 3.7e-36 156.0 164 44.5
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 3.5e-34 149.4 128 52.3
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 5.0e-33 145.6 211 39.3
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.1e-32 144.4 222 37.4
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 4.2e-32 142.5 128 50.0
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 8.8e-30 134.8 129 48.1
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 8.2e-28 128.3 210 34.8
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 3.5e-26 122.9 129 46.5
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 6.5e-25 118.6 211 37.4
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 6.8e-22 108.6 88 52.3
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 3.4e-21 106.3 95 53.7
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 2.2e-20 103.6 92 47.8
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 2.1e-15 87.0 189 32.3
AUR62004087 Chenopodium quinoa HOM05D003144 ORTHO05D003539 2.8e-07 60.1 165 28.5
MCO09G464 Micromonas commoda HOM05D005542 ORTHO05D006708 3.6e-07 59.7 142 31.7
Lj2g0003092 Lotus japonicus HOM05D003144 ORTHO05D003539 1.8e-06 57.4 144 27.1
Sabra07G0018700 Salix brachista HOM05D003144 ORTHO05D003539 1.8e-06 57.4 159 30.2
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 2.3e-06 57.0 139 28.8
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 2.3e-06 57.0 139 30.9
TWI09G1569 Tripterygium wilfordii HOM05D003144 ORTHO05D003539 5.2e-06 55.8 137 23.4
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 6.8e-06 55.5 149 27.5
Psat4g094920 Pisum sativum HOM05D003144 ORTHO05D003539 8.9e-06 55.1 157 27.4
Potri.005G120400 Populus trichocarpa HOM05D003144 ORTHO05D003539 8.9e-06 55.1 159 27.7
PGSC0003DMG402003606 Solanum tuberosum HOM05D003144 ORTHO05D003539 8.9e-06 55.1 136 27.9
TAR628G0922 Trochodendron aralioides HOM05D003144 ORTHO05D003539 8.9e-06 55.1 139 26.6


User provided reference genes

Program Settings