Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.0e-228 795.4 406 100.0
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.8e-160 569.7 388 76.3
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 3.3e-98 362.8 387 49.6
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 4.1e-96 355.9 372 50.3
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.7e-94 350.5 381 47.8
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.2e-94 350.1 379 47.2
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.2e-94 350.1 379 47.0
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 2.9e-94 349.7 380 48.9
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 2.9e-94 349.7 379 48.3
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 6.5e-94 348.6 377 49.1
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.9e-93 347.1 374 48.1
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 2.5e-93 346.7 380 47.1
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 3.2e-93 346.3 379 47.5
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 5.5e-93 345.5 377 46.9
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 7.2e-93 345.1 376 47.3
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 7.2e-93 345.1 379 47.2
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 9.4e-93 344.7 377 46.7
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 1.2e-92 344.4 379 47.8
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 1.2e-92 344.4 374 48.1
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.6e-92 344.0 377 46.7
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 2.1e-92 343.6 381 45.9
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 3.6e-92 342.8 374 47.3
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 4.7e-92 342.4 374 47.6
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 8.0e-92 341.7 379 47.0
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.0e-91 341.3 374 48.1
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 1.4e-91 340.9 374 47.3
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.4e-91 340.9 375 47.2
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.8e-91 340.5 383 48.8
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 2.3e-91 340.1 374 47.3
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 3.0e-91 339.7 374 47.1
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 3.0e-91 339.7 380 46.1
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 1.1e-90 337.8 379 47.2
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 1.1e-90 337.8 379 47.5
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 1.5e-90 337.4 380 47.4
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 1.5e-90 337.4 380 46.1
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 2.0e-90 337.0 374 46.8
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 2.6e-90 336.7 386 48.2
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 2.6e-90 336.7 385 47.8
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 7.4e-90 335.1 375 47.2
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 9.7e-90 334.7 380 45.5
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 1.3e-89 334.3 375 46.7
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.3e-89 334.3 377 45.6
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 2.8e-89 333.2 374 47.1
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 4.8e-89 332.4 374 46.8
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 4.8e-89 332.4 379 47.0
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.1e-88 331.3 381 44.9
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 1.4e-88 330.9 379 45.9
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.4e-88 330.9 375 46.1
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.8e-88 330.5 382 45.5
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.8e-88 330.5 374 45.7
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 5.3e-88 328.9 377 45.9
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 7.0e-88 328.6 375 46.4
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 7.0e-88 328.6 372 47.0
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 7.0e-88 328.6 374 45.2
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 9.1e-88 328.2 379 46.4
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.6e-87 326.6 374 47.1
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 3.5e-87 326.2 375 45.9
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.7e-87 325.1 374 46.5
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 7.7e-87 325.1 374 46.5
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 1.0e-86 324.7 381 45.9
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 2.2e-86 323.6 379 45.9
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 5.0e-86 322.4 376 46.5
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 5.0e-86 322.4 374 45.5
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.9e-85 320.5 377 45.4
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.9e-85 320.5 409 43.3
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.5e-85 320.1 374 46.3
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 3.2e-85 319.7 379 44.9
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 4.2e-85 319.3 377 45.6
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 4.2e-85 319.3 390 44.6
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.6e-84 317.4 373 45.3
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.6e-84 317.4 387 46.0
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 2.1e-84 317.0 381 45.9
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 3.6e-84 316.2 375 44.0
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 1.0e-83 314.7 374 43.9
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 2.3e-83 313.5 406 42.1
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.0e-83 312.8 387 45.5
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 5.2e-83 312.4 379 44.1
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.0e-82 310.5 374 44.9
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 2.2e-81 307.0 381 43.6
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 6.3e-81 305.4 374 45.5
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 7.0e-80 302.0 372 43.3
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 9.1e-80 301.6 374 44.1
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 9.1e-80 301.6 340 45.0
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.0e-78 298.1 374 44.7
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.9e-78 296.6 388 41.2
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 5.0e-78 295.8 381 41.5
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 6.5e-78 295.4 372 44.4
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.2e-77 293.1 377 43.2
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 4.7e-76 289.3 384 40.9
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 3.4e-74 283.1 372 43.3
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 8.3e-73 278.5 374 42.0
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 1.4e-72 277.7 392 42.1
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 1.8e-72 277.3 388 42.3
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 2.7e-71 273.5 374 43.0
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 4.5e-71 272.7 375 40.5
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 4.5e-71 272.7 390 41.8
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.9e-71 272.3 387 40.3
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.4e-67 261.2 389 40.4
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 7.0e-64 248.8 493 33.5
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.1e-61 241.5 269 48.7
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 1.0e-59 235.0 275 45.8
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.0e-58 230.7 269 45.7
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 6.4e-57 225.7 384 37.5
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 3.2e-56 223.4 276 44.2
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 6.6e-54 215.7 299 41.1
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 2.5e-53 213.8 213 50.2
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 3.1e-43 180.3 374 32.9
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 6.8e-43 179.1 225 46.2
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.2e-34 151.8 425 29.4
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.1e-31 141.0 146 45.9
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 1.0e-30 138.7 145 50.3
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 4.8e-28 129.8 405 25.9
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 8.4e-25 119.0 208 37.5
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 3.5e-23 113.6 114 49.1
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 8.1e-20 102.4 98 48.0
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.5e-18 98.2 99 45.5
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 2.4e-16 90.9 76 51.3
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 9.3e-16 89.0 92 48.9
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 9.3e-16 89.0 89 44.9
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 1.8e-14 84.7 172 34.9
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 9.0e-11 72.4 124 35.5
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.0e-10 71.2 91 41.8
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 3.4e-10 70.5 93 40.9
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 3.8e-09 67.0 87 44.8
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 3.8e-09 67.0 87 44.8
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.9e-08 64.7 62 50.0
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.6e-07 61.6 88 39.8
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 3.5e-07 60.5 88 39.8
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 3.9e-06 57.0 143 30.1


User provided reference genes

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