Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 1.8e-309 1065.1 532 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 4.2e-157 558.9 404 70.5
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 8.1e-153 544.7 408 68.9
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 8.7e-147 524.6 401 68.3
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 2.5e-146 523.1 407 65.8
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.6e-145 520.4 406 67.2
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.6e-145 520.4 399 68.7
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 2.8e-145 519.6 399 67.9
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 3.6e-145 519.2 398 66.8
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 1.2e-143 514.2 403 65.5
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.5e-143 513.8 403 66.3
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.5e-143 513.8 398 67.8
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 2.0e-143 513.5 398 65.8
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 3.4e-143 512.7 398 67.3
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 3.4e-143 512.7 404 66.1
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 5.8e-143 511.9 397 66.5
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 5.8e-143 511.9 399 68.4
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 5.8e-143 511.9 398 67.3
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 7.6e-143 511.5 398 65.1
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 2.2e-142 510.0 408 65.2
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 2.9e-142 509.6 397 66.0
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 2.9e-142 509.6 399 67.2
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 2.9e-142 509.6 398 66.3
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 2.9e-142 509.6 399 67.7
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 3.8e-142 509.2 397 66.0
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 3.8e-142 509.2 408 65.7
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 6.4e-142 508.4 403 65.8
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 1.1e-141 507.7 392 67.9
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 1.9e-141 506.9 399 66.2
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.9e-141 506.9 398 66.8
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 3.2e-141 506.1 412 65.0
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 3.2e-141 506.1 398 66.1
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 7.1e-141 505.0 404 66.8
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 7.1e-141 505.0 399 66.4
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 7.1e-141 505.0 401 65.6
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 9.3e-141 504.6 440 62.3
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 9.3e-141 504.6 404 65.6
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 1.2e-140 504.2 399 64.9
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 1.6e-140 503.8 399 65.7
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 1.6e-140 503.8 403 65.0
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 2.1e-140 503.4 398 66.8
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 2.1e-140 503.4 419 63.5
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 3.5e-140 502.7 426 63.1
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 3.5e-140 502.7 391 67.3
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 3.5e-140 502.7 398 65.8
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 4.6e-140 502.3 401 65.6
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 6.0e-140 501.9 399 66.2
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 6.0e-140 501.9 398 65.3
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.0e-139 501.1 428 63.3
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 2.3e-139 500.0 401 64.6
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 2.3e-139 500.0 406 64.3
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 3.9e-139 499.2 412 63.3
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 8.7e-139 498.0 399 66.7
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 2.5e-138 496.5 397 64.0
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 5.6e-138 495.4 380 67.9
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 1.3e-137 494.2 401 64.3
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-136 491.1 417 63.5
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 1.1e-136 491.1 435 60.2
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 9.0e-136 488.0 391 65.0
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 1.0e-134 484.6 366 68.0
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.7e-134 483.8 372 68.0
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 3.8e-134 482.6 376 67.8
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 3.2e-133 479.6 384 65.4
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 9.3e-133 478.0 398 63.3
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.5e-130 470.7 527 52.9
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 3.3e-130 469.5 438 59.1
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 4.3e-130 469.2 369 66.1
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 2.8e-129 466.5 390 63.6
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.4e-128 464.2 451 58.1
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.8e-128 463.8 376 63.3
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 3.4e-127 459.5 405 61.5
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 5.8e-127 458.8 432 58.3
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.5e-125 453.4 364 67.0
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 2.1e-124 450.3 400 60.5
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 1.1e-122 444.5 398 60.1
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.9e-122 443.7 399 60.2
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 3.3e-122 443.0 401 61.8
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 5.0e-118 429.1 292 74.0
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 5.1e-115 419.1 441 53.7
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 7.4e-114 415.2 386 60.9
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 1.8e-112 410.6 415 57.1
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 2.4e-112 410.2 406 53.9
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 9.1e-112 408.3 403 56.3
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 1.2e-111 407.9 413 55.7
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 5.9e-111 405.6 391 57.5
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 3.2e-109 399.8 405 53.3
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.1e-106 391.3 410 54.4
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.6e-106 390.2 402 55.2
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 3.3e-106 389.8 466 47.9
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 4.8e-105 386.0 368 59.0
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.1e-104 384.8 399 55.4
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 2.0e-103 380.6 399 53.9
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 6.7e-99 365.5 301 63.8
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 1.4e-96 357.8 244 75.0
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 2.0e-95 354.0 326 59.5
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.2e-84 318.2 262 63.7
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 1.7e-81 307.8 267 62.2
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 3.3e-77 293.5 189 78.8
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 5.6e-69 266.2 190 73.7
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.0e-67 261.9 187 73.3
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.3e-65 255.0 191 71.2
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 9.2e-56 222.2 208 55.3
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 1.0e-54 218.8 155 71.0
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 5.1e-54 216.5 152 71.1
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 8.6e-54 215.7 140 76.4
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 5.6e-53 213.0 144 74.3
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.6e-52 211.5 219 56.2
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.6e-52 211.5 219 56.2
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.6e-52 211.5 219 56.2
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 4.7e-52 209.9 137 75.2
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 1.8e-51 208.0 224 57.1
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.8e-51 208.0 173 64.2
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 4.0e-51 206.8 319 41.1
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 4.9e-49 199.9 181 56.9
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 6.4e-49 199.5 182 56.6
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 6.4e-49 199.5 541 30.9
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 8.4e-49 199.1 182 57.7
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.1e-48 198.7 124 77.4
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.9e-41 173.3 167 53.9
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.7e-38 164.9 97 84.5
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 4.8e-36 156.8 115 70.4
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 1.2e-31 142.1 134 55.2
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 5.6e-29 133.3 84 78.6
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 7.4e-29 132.9 83 78.3
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 2.9e-25 120.9 91 70.3
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 4.9e-25 120.2 94 68.1
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 9.3e-24 115.9 124 50.0
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.3e-22 112.1 131 48.1
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.5e-21 108.6 74 67.6
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 2.4e-19 101.3 109 50.5
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 7.6e-18 96.3 72 65.3
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.9e-17 93.6 86 55.8
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 2.3e-14 84.7 59 69.5
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 9.0e-11 72.8 176 33.0
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 2.0e-10 71.6 160 35.6
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 4.6e-07 60.5 72 44.4
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 6.1e-07 60.1 45 60.0


User provided reference genes

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