Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 4.2e-234 814.3 411 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 7.5e-98 361.7 297 59.6
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 8.9e-91 338.2 288 55.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 9.8e-90 334.7 275 58.5
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.3e-89 334.3 246 62.6
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.2e-89 333.6 245 62.9
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.9e-89 333.2 276 59.1
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.9e-89 333.2 275 58.2
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.9e-89 332.4 261 59.8
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 6.4e-89 332.0 263 60.8
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.1e-88 331.3 326 50.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.4e-88 330.1 327 50.8
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.4e-88 330.1 242 62.8
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.2e-88 329.7 244 61.9
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 4.1e-88 329.3 272 58.5
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.4e-88 328.9 242 62.8
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 5.4e-88 328.9 250 60.4
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 5.4e-88 328.9 272 57.7
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.2e-87 327.8 246 61.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.2e-87 327.8 241 63.5
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.6e-87 327.4 261 60.5
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.6e-87 327.4 245 62.0
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.6e-87 327.4 245 61.2
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 4.6e-87 325.9 245 60.8
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 6.0e-87 325.5 241 63.1
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 7.8e-87 325.1 273 56.8
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.0e-86 324.7 277 57.4
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.7e-86 323.9 240 63.3
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.7e-86 323.9 240 63.3
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.3e-86 323.6 241 62.7
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.3e-86 323.6 276 57.6
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 2.3e-86 323.6 244 60.2
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.0e-86 323.2 263 57.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.0e-86 323.2 269 56.5
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 3.0e-86 323.2 283 57.2
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 3.0e-86 323.2 243 60.5
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 3.9e-86 322.8 248 59.7
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 3.9e-86 322.8 245 60.8
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 3.9e-86 322.8 255 58.8
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 3.9e-86 322.8 241 61.4
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.1e-86 322.4 289 55.0
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 6.6e-86 322.0 238 63.0
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 8.6e-86 321.6 242 60.3
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.1e-85 321.2 235 63.4
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.1e-85 321.2 254 59.1
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-85 321.2 241 62.7
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.1e-85 321.2 250 59.6
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-85 320.9 244 61.5
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.5e-85 320.9 241 62.7
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.5e-85 320.9 283 56.9
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.9e-85 320.5 244 60.2
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.9e-85 320.5 281 54.8
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.9e-85 320.5 267 56.9
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.9e-85 320.5 253 58.9
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.9e-85 320.5 269 57.6
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.9e-85 320.5 266 56.8
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.3e-85 319.7 266 56.0
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 3.3e-85 319.7 244 59.8
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 4.3e-85 319.3 239 62.3
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 5.6e-85 318.9 273 55.3
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 9.5e-85 318.2 245 60.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 9.5e-85 318.2 263 58.2
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.6e-84 317.4 244 59.4
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.6e-84 317.4 295 52.5
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.6e-84 317.4 257 58.4
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.8e-84 316.6 267 56.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.8e-84 316.6 270 56.3
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.8e-84 316.6 270 56.3
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.6e-84 316.2 271 55.7
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 3.6e-84 316.2 244 59.0
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.6e-84 316.2 272 56.2
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 3.6e-84 316.2 241 61.4
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.6e-84 316.2 271 55.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.7e-84 315.8 265 55.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.3e-83 313.5 267 55.4
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.1e-83 313.2 243 60.1
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 3.1e-83 313.2 263 56.7
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 3.1e-83 313.2 245 58.8
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 4.0e-83 312.8 241 60.2
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.2e-83 312.4 243 59.7
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.2e-83 312.4 242 60.3
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 6.8e-83 312.0 278 54.7
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.5e-82 310.8 246 59.3
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.0e-82 310.5 278 55.0
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.8e-82 308.9 245 57.1
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.3e-81 307.8 263 53.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.2e-81 307.0 289 52.9
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 6.4e-81 305.4 262 56.9
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.1e-80 304.7 271 55.0
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.4e-80 303.5 250 56.4
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 5.4e-80 302.4 246 58.1
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.6e-76 290.8 241 57.7
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 4.7e-76 289.3 249 55.4
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 3.1e-75 286.6 259 54.8
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 4.0e-75 286.2 241 57.3
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 6.8e-75 285.4 214 64.0
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 8.9e-75 285.0 311 49.2
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.5e-74 284.3 335 45.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 4.4e-74 282.7 265 54.3
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 5.8e-74 282.3 297 50.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 1.7e-73 280.8 245 55.5
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 6.4e-73 278.9 275 50.2
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 7.8e-71 271.9 215 58.1
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.0e-70 271.6 211 61.1
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 5.1e-70 269.2 392 40.3
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-69 268.1 236 55.1
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 9.6e-69 265.0 240 54.2
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.1e-68 263.8 274 47.8
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 4.4e-66 256.1 215 57.7
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.4e-64 250.4 277 49.5
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.2e-64 250.0 239 51.5
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.1e-63 247.3 246 49.6
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.3e-62 244.6 231 52.4
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 8.7e-62 241.9 250 45.2
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 1.6e-60 237.7 272 46.0
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.5e-56 222.6 228 48.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 7.9e-55 218.8 165 63.6
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 2.8e-52 210.3 160 65.0
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 4.0e-51 206.5 178 58.4
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.3e-49 201.4 166 58.4
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.8e-49 199.9 239 45.2
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.9e-48 197.6 230 46.1
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 4.3e-45 186.4 143 62.2
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 9.6e-45 185.3 240 42.5
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 9.0e-43 178.7 168 51.8
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 9.0e-43 178.7 192 47.4
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.5e-42 176.4 136 61.8
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 6.5e-41 172.6 147 55.1
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 3.2e-40 170.2 244 41.4
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.2e-39 168.3 136 58.1
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.6e-39 167.9 201 47.8
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 4.1e-35 153.3 132 55.3
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 5.3e-35 152.9 110 60.9
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.0e-34 151.0 144 52.8
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.0e-33 148.7 244 36.5
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.9e-33 147.1 99 62.6
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.8e-33 146.7 107 58.9
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.5e-32 144.1 129 55.8
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 6.1e-31 139.4 113 57.5
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 6.1e-31 139.4 223 37.7
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.8e-30 137.9 82 69.5
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.0e-30 137.1 108 58.3
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 2.5e-29 134.0 136 51.5
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 2.5e-29 134.0 136 51.5
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 8.5e-25 119.0 164 42.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 6.1e-23 112.8 149 39.6
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.3e-22 110.9 86 60.5
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 3.0e-22 110.5 118 48.3
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 7.0e-19 99.4 73 63.0
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 2.6e-18 97.4 76 57.9
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.0e-17 95.5 88 50.0
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.9e-17 94.0 56 64.3
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 6.5e-17 92.8 65 64.6
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.0e-14 85.5 92 43.5
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 5.2e-14 83.2 73 52.1
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 6.7e-14 82.8 84 51.2
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.6e-13 80.9 62 59.7
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 4.4e-13 80.1 58 58.6
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 5.7e-13 79.7 51 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.1e-11 75.5 102 37.3
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 4.5e-10 70.1 64 48.4
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.3e-09 68.6 114 31.6
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 2.9e-09 67.4 53 49.1


User provided reference genes

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