Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 0.0e+00 2154.4 1135 100.0
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 0.0e+00 1148.3 1138 56.9
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.7e-123 448.4 1081 32.3
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 4.9e-115 420.2 920 33.6
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 6.2e-110 403.3 524 41.2
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.5e-108 397.1 955 33.2
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 7.9e-105 386.3 481 41.6
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 3.9e-104 384.0 917 30.0
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 6.7e-104 383.3 481 41.4
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 1.5e-103 382.1 481 42.2
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.9e-103 381.7 584 37.7
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.9e-103 381.7 925 31.2
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 2.5e-103 381.3 584 37.5
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 2.5e-103 381.3 491 40.9
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.3e-103 380.9 480 41.0
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 5.6e-103 380.2 613 37.0
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.3e-102 379.0 527 38.5
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.3e-102 379.0 481 42.2
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.6e-102 378.6 935 30.8
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.6e-102 378.6 475 41.3
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.6e-102 378.6 660 35.5
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 2.8e-102 377.9 474 40.9
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 3.7e-102 377.5 502 39.6
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 4.8e-102 377.1 483 40.4
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 4.8e-102 377.1 481 41.2
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 4.8e-102 377.1 481 40.5
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 8.1e-102 376.3 491 38.9
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 8.1e-102 376.3 480 40.6
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.4e-101 375.6 480 42.1
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 1.4e-101 375.6 617 36.8
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.8e-101 375.2 478 41.0
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.8e-101 375.2 480 40.8
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 3.1e-101 374.4 477 40.9
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 3.1e-101 374.4 477 40.9
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 6.9e-101 373.2 481 41.0
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 6.9e-101 373.2 494 40.3
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 6.9e-101 373.2 937 30.0
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.9e-101 373.2 491 39.9
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.2e-100 372.5 929 30.9
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.2e-100 372.5 475 41.5
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.5e-100 372.1 562 36.1
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.0e-100 371.7 906 29.9
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 2.0e-100 371.7 615 35.9
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.6e-100 371.3 477 40.7
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.4e-100 370.9 479 40.5
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 4.5e-100 370.5 481 40.3
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 4.5e-100 370.5 921 30.5
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.8e-100 370.2 922 30.3
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 5.8e-100 370.2 530 38.5
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 5.8e-100 370.2 946 29.5
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 7.6e-100 369.8 603 36.3
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 7.6e-100 369.8 529 38.8
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.0e-99 369.4 487 39.2
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.3e-99 369.0 491 40.1
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.3e-99 369.0 577 37.6
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.3e-99 369.0 480 40.0
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 1.7e-99 368.6 474 40.1
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.2e-99 368.2 489 39.1
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.8e-99 367.5 536 37.5
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 3.8e-99 367.5 923 30.2
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 3.8e-99 367.5 945 30.5
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 4.9e-99 367.1 925 30.3
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 4.9e-99 367.1 609 36.9
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 6.5e-99 366.7 529 38.2
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 6.5e-99 366.7 481 39.7
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.1e-98 365.9 483 40.4
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 1.4e-98 365.5 483 39.8
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.4e-98 365.5 534 38.0
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 2.5e-98 364.8 585 36.2
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 2.5e-98 364.8 481 39.5
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 2.5e-98 364.8 480 39.8
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 5.5e-98 363.6 478 41.4
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 7.1e-98 363.2 474 39.7
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 7.1e-98 363.2 485 39.8
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 9.3e-98 362.8 646 35.0
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 9.3e-98 362.8 570 36.8
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 9.3e-98 362.8 479 38.8
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 9.3e-98 362.8 481 39.9
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.6e-97 362.1 481 40.5
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 2.1e-97 361.7 481 38.5
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 2.7e-97 361.3 481 39.9
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 2.7e-97 361.3 479 38.8
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.7e-97 361.3 479 38.8
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 2.7e-97 361.3 490 39.4
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 2.7e-97 361.3 472 40.5
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 2.7e-97 361.3 582 34.9
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 4.6e-97 360.5 482 40.0
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 6.0e-97 360.1 491 39.1
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 2.3e-96 358.2 478 40.2
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 2.3e-96 358.2 481 40.7
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.0e-96 357.8 480 39.2
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 3.0e-96 357.8 481 38.9
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 6.7e-96 356.7 482 39.8
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.7e-96 356.7 479 39.2
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 8.7e-96 356.3 486 40.1
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.1e-95 355.9 481 38.3
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.5e-95 355.5 490 39.8
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.9e-95 355.1 508 38.4
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.3e-95 354.4 490 39.2
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.3e-95 354.0 467 40.0
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 5.7e-95 353.6 480 38.3
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 9.6e-95 352.8 491 38.5
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 1.3e-94 352.4 495 39.4
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 2.8e-94 351.3 474 39.7
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 8.2e-94 349.7 534 38.4
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 8.2e-94 349.7 536 38.8
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.4e-93 349.0 475 39.8
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.4e-93 349.0 490 37.6
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.4e-93 348.2 526 38.2
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 2.4e-93 348.2 486 39.7
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 4.1e-93 347.4 479 40.5
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 2.0e-92 345.1 491 38.3
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.9e-92 343.6 631 34.1
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 6.5e-91 340.1 478 38.9
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 6.1e-89 333.6 521 35.3
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.8e-88 332.0 506 35.4
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.5e-87 328.9 496 37.9
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 8.2e-86 323.2 501 36.9
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.1e-85 322.8 947 28.4
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 4.1e-85 320.9 481 37.2
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 5.3e-85 320.5 427 40.0
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 6.3e-78 297.0 506 35.6
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 5.1e-72 277.3 845 28.8
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 2.7e-65 255.0 287 47.4
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 2.9e-38 165.2 269 34.9
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 2.8e-25 122.1 465 24.3
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.2e-13 82.0 119 35.3
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.1e-12 79.3 113 36.3
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 3.3e-10 72.0 127 33.9
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.1e-08 65.5 173 25.4


User provided reference genes

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