Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 2.2e-230 802.0 409 100.0
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 4.3e-146 521.9 412 67.7
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 6.3e-137 491.5 345 69.3
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 1.1e-136 490.7 361 67.9
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 9.0e-136 487.6 346 69.9
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.2e-135 487.3 345 70.1
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 1.5e-135 486.9 346 69.9
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 7.7e-135 484.6 362 68.2
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 1.3e-134 483.8 344 69.8
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 2.2e-134 483.0 345 69.6
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.2e-134 483.0 362 68.0
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.9e-134 482.6 362 68.2
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 6.5e-134 481.5 345 68.4
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 6.5e-134 481.5 345 68.4
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 6.5e-134 481.5 381 64.6
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 6.5e-134 481.5 348 69.8
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 1.9e-133 479.9 348 69.5
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.5e-133 479.6 367 67.6
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 2.5e-133 479.6 337 70.0
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 3.2e-133 479.2 345 67.0
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 5.5e-133 478.4 350 68.0
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 5.5e-133 478.4 345 66.7
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 1.6e-132 476.9 348 69.8
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 1.6e-132 476.9 386 63.0
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 2.7e-132 476.1 348 66.7
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 3.6e-132 475.7 348 68.4
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 1.4e-131 473.8 348 67.0
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.4e-131 473.8 345 67.8
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 1.4e-131 473.8 345 66.4
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.8e-131 473.4 345 67.8
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 1.8e-131 473.4 375 63.2
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 3.0e-131 472.6 345 67.2
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 3.9e-131 472.2 348 67.2
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 5.1e-131 471.9 345 67.2
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 5.1e-131 471.9 387 63.6
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 8.8e-131 471.1 346 66.5
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.1e-130 470.7 345 66.4
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 1.5e-130 470.3 392 61.0
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 1.5e-130 470.3 347 66.6
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 2.0e-130 469.9 345 67.0
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 2.0e-130 469.9 345 66.4
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 2.5e-130 469.5 345 67.0
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 2.5e-130 469.5 371 62.5
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 3.3e-130 469.2 345 66.7
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 3.3e-130 469.2 365 63.8
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 4.3e-130 468.8 387 60.7
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 4.3e-130 468.8 345 66.7
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 7.4e-130 468.0 345 65.8
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 9.7e-130 467.6 382 61.5
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 9.7e-130 467.6 345 66.4
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 1.3e-129 467.2 363 63.6
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.3e-129 467.2 362 64.4
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.3e-129 467.2 345 67.0
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 1.3e-129 467.2 365 63.3
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.3e-129 467.2 408 61.0
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.3e-129 467.2 408 61.0
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 2.2e-129 466.5 345 65.2
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 2.2e-129 466.5 367 63.8
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 2.8e-129 466.1 343 65.9
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 3.7e-129 465.7 356 64.9
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.8e-129 465.3 345 66.4
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 4.8e-129 465.3 345 66.4
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 4.8e-129 465.3 347 65.7
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 6.3e-129 464.9 345 66.4
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 8.2e-129 464.5 345 65.5
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 8.2e-129 464.5 387 60.2
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 8.2e-129 464.5 345 67.0
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 8.2e-129 464.5 409 60.1
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 1.1e-128 464.2 343 66.2
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 1.8e-128 463.4 345 66.4
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 2.4e-128 463.0 346 65.6
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 9.1e-128 461.1 345 67.0
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 1.2e-127 460.7 364 62.1
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.2e-127 460.7 346 65.6
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 1.5e-127 460.3 345 65.8
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 5.9e-127 458.4 344 65.7
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 5.9e-127 458.4 333 66.4
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 5.9e-127 458.4 345 65.8
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 7.7e-127 458.0 337 66.5
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 7.7e-127 458.0 345 64.3
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 2.2e-126 456.4 345 64.6
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 2.9e-126 456.1 344 64.8
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 5.0e-126 455.3 337 66.8
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 8.5e-126 454.5 345 65.2
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.9e-125 453.4 346 65.0
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.9e-125 453.4 346 65.0
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 7.2e-125 451.4 346 64.7
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 2.1e-124 449.9 346 64.5
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 6.1e-124 448.4 364 61.3
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 2.3e-123 446.4 368 61.1
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 1.7e-121 440.3 337 63.5
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 2.8e-121 439.5 352 63.9
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 3.1e-120 436.0 349 63.9
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 1.7e-118 430.3 344 63.7
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 5.5e-117 425.2 345 62.3
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 7.2e-117 424.9 444 52.3
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 9.4e-117 424.5 369 57.7
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 2.1e-116 423.3 385 58.4
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 7.7e-111 404.8 306 65.0
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 5.0e-110 402.1 306 64.4
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 4.7e-108 395.6 359 57.4
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 8.8e-107 391.3 283 67.5
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 8.8e-99 364.8 345 54.8
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.7e-97 359.4 434 48.4
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 3.2e-80 303.1 200 74.0
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 6.0e-71 272.3 203 65.5
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 7.1e-64 248.8 246 53.7
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 1.9e-61 240.7 246 51.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 8.4e-57 225.3 184 61.4
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.9e-56 224.2 160 65.0
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 2.1e-55 220.7 162 67.9
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 1.5e-53 214.5 162 64.8
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 9.9e-42 175.3 349 37.0
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 9.9e-42 175.3 260 41.2
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 3.2e-40 170.2 230 42.2
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 1.6e-39 167.9 205 44.9
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 6.7e-38 162.5 351 31.3
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.1e-36 157.5 131 64.1
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 6.2e-36 156.0 102 72.5
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 1.1e-35 155.2 284 33.5
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 2.4e-35 154.1 110 65.5
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 2.0e-34 151.0 123 65.0
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 3.4e-34 150.2 283 33.2
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 1.9e-32 144.4 110 61.8
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 5.5e-32 142.9 110 62.7
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 1.0e-22 112.1 210 33.3
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 7.4e-21 105.9 140 45.7
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 9.7e-21 105.5 140 45.7
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 3.7e-20 103.6 90 58.9
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.8e-19 101.3 299 27.8
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 7.2e-16 89.4 267 30.0
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 1.5e-13 81.6 78 59.0
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 3.3e-13 80.5 131 37.4
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 7.4e-13 79.3 52 67.3
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 4.8e-12 76.6 82 51.2
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 4.8e-12 76.6 58 70.7
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 8.2e-12 75.9 51 68.6
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 1.1e-11 75.5 49 65.3
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 2.4e-11 74.3 80 53.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 2.4e-11 74.3 80 53.8
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 9.1e-11 72.4 53 66.0
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.5e-10 71.6 50 70.0
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.0e-10 71.2 60 65.0
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.0e-09 68.9 69 55.1
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.3e-09 68.6 50 56.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 1.4e-08 65.1 67 50.7
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.1e-07 59.7 53 62.3
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 7.9e-07 59.3 55 60.0
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 1.8e-06 58.2 52 61.5
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.8e-06 58.2 38 73.7


User provided reference genes

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