Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_60 Physcomitrium patens HOM05D004088 ORTHO05D004736 0.0e+00 2341.2 1473 100.0
SEGI_22037 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 1.4e-16 93.6 194 32.0
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 8.9e-16 90.9 185 33.5
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 8.9e-16 90.9 185 33.5
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 1.7e-14 86.7 159 35.8
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 2.2e-14 86.3 191 30.9
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 8.3e-14 84.3 216 29.6
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 8.3e-14 84.3 216 29.6
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 1.8e-13 83.2 216 29.6
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 5.4e-13 81.6 91 45.1
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 4.6e-12 78.6 176 31.2
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 7.8e-12 77.8 167 31.7
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 7.8e-12 77.8 155 33.5
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.0e-11 77.4 103 41.7
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 1.7e-11 76.6 102 44.1
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 1.7e-11 76.6 166 31.9
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.7e-11 76.6 99 41.4
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 3.0e-11 75.9 96 42.7
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 3.0e-11 75.9 184 29.3
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 3.9e-11 75.5 184 28.8
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 3.9e-11 75.5 204 27.5
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 3.9e-11 75.5 96 43.8
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 5.0e-11 75.1 179 30.7
Os04g0521600 Oryza sativa ssp. japonica HOM05D007562 ORTHO05D004736 5.0e-11 75.1 104 41.3
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 6.6e-11 74.7 155 35.5
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 8.6e-11 74.3 175 31.4
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 1.1e-10 73.9 96 41.7
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.1e-10 73.9 190 31.1
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 1.9e-10 73.2 169 32.5
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 1.9e-10 73.2 184 31.0
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 1.9e-10 73.2 154 36.4
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 2.5e-10 72.8 176 30.7
AagrBONN_evm.TU.Sc2ySwM_117.446 Anthoceros agrestis HOM05D004088 ORTHO05D004736 2.5e-10 72.8 147 34.7
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 2.5e-10 72.8 188 33.0
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.5e-10 72.8 147 37.4
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 3.3e-10 72.4 199 31.2
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 3.3e-10 72.4 184 29.9
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 3.3e-10 72.4 179 27.9
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 3.3e-10 72.4 132 36.4
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 4.3e-10 72.0 210 31.0
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 4.3e-10 72.0 96 36.5
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 7.3e-10 71.2 201 26.9
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 7.3e-10 71.2 143 32.2
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 9.5e-10 70.9 141 34.0
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.2e-09 70.5 164 35.4
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 1.2e-09 70.5 58 53.4
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 1.2e-09 70.5 107 35.5
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 1.2e-09 70.5 165 30.9
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 1.6e-09 70.1 155 32.9
Dinv11774 Davidia involucrata HOM05D007562 ORTHO05D009721 1.6e-09 70.1 96 41.7
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 2.1e-09 69.7 208 29.3
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 2.1e-09 69.7 178 29.2
Gohir.A06G167500 Gossypium hirsutum HOM05D007562 ORTHO05D009721 2.8e-09 69.3 105 35.2
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 2.8e-09 69.3 104 37.5
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 2.8e-09 69.3 148 33.8
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 3.6e-09 68.9 180 30.6
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 3.6e-09 68.9 90 41.1
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 3.6e-09 68.9 178 29.2
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 4.7e-09 68.6 176 34.1
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 4.7e-09 68.6 196 27.6
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 4.7e-09 68.6 171 27.5
Thecc.10G073300 Theobroma cacao HOM05D007562 ORTHO05D009721 4.7e-09 68.6 102 36.3
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 6.2e-09 68.2 161 29.8
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 6.2e-09 68.2 104 38.5
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 6.2e-09 68.2 54 55.6
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 6.2e-09 68.2 174 28.2
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 6.2e-09 68.2 97 39.2
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 6.2e-09 68.2 83 43.4
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 8.0e-09 67.8 174 28.7
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 8.0e-09 67.8 203 28.6
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 8.0e-09 67.8 161 28.6
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 1.1e-08 67.4 175 29.1
ClCG05G020990 Citrullus lanatus HOM05D007562 ORTHO05D009721 1.4e-08 67.0 97 40.2
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 1.4e-08 67.0 102 39.2
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 1.4e-08 67.0 170 28.8
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 1.4e-08 67.0 171 31.6
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 1.4e-08 67.0 170 32.4
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 1.8e-08 66.6 173 26.6
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 1.8e-08 66.6 95 40.0
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 1.8e-08 66.6 203 28.6
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 1.8e-08 66.6 198 28.8
SEGI_23472 Sequoiadendron giganteum HOM05D004088 ORTHO05D004736 1.8e-08 66.6 172 29.1
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.3e-08 66.2 89 41.6
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 2.3e-08 66.2 94 43.6
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 4.0e-08 65.5 171 31.0
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 4.0e-08 65.5 175 29.1
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 5.2e-08 65.1 150 32.0
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 5.2e-08 65.1 176 29.0
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 6.8e-08 64.7 187 29.4
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 6.8e-08 64.7 177 29.9
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 8.9e-08 64.3 130 33.1
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 8.9e-08 64.3 163 28.8
HPP92_017740 Vanilla planifolia HOM05D004088 ORTHO05D000818 8.9e-08 64.3 75 46.7
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 1.2e-07 63.9 177 28.2
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 1.2e-07 63.9 184 27.7
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.5e-07 63.5 176 27.3
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 1.5e-07 63.5 100 36.0
CDE12G0038 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.5e-07 63.5 189 27.0
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 2.0e-07 63.2 189 28.6
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 2.0e-07 63.2 172 30.2
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 2.6e-07 62.8 197 27.9
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 2.6e-07 62.8 193 26.9
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 2.6e-07 62.8 193 26.9
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 2.6e-07 62.8 173 27.7
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 2.6e-07 62.8 174 30.5
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 2.6e-07 62.8 89 41.6
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 4.4e-07 62.0 166 31.3
Mapoly0015s0020 Marchantia polymorpha HOM05D004088 ORTHO05D004736 4.4e-07 62.0 1216 19.3
Gohir.D06G174900 Gossypium hirsutum HOM05D007562 ORTHO05D009721 5.8e-07 61.6 98 34.7
Gorai.010G205300 Gossypium raimondii HOM05D007562 ORTHO05D009721 5.8e-07 61.6 98 34.7
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 5.8e-07 61.6 158 28.5
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 7.5e-07 61.2 107 32.7
VMungo0464G0183 Vigna mungo HOM05D007562 ORTHO05D009721 7.5e-07 61.2 93 36.6
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 9.8e-07 60.8 166 30.7
Psat1g112000 Pisum sativum HOM05D007562 ORTHO05D009721 9.8e-07 60.8 107 30.8
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 9.8e-07 60.8 176 27.8
CARHR198320 Cardamine hirsuta HOM05D007562 ORTHO05D009721 1.3e-06 60.5 106 32.1
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 1.3e-06 60.5 158 29.7
Ciclev10034000m.g Citrus clementina HOM05D007562 ORTHO05D004736 1.3e-06 60.5 86 40.7
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 1.3e-06 60.5 183 27.3
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 1.3e-06 60.5 182 25.8
SMO351G0272 Selaginella moellendorffii HOM05D004088 ORTHO05D004736 1.3e-06 60.5 163 26.4
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 1.7e-06 60.1 97 35.1
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 1.7e-06 60.1 99 35.4
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 1.7e-06 60.1 111 37.8
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.7e-06 60.1 193 28.5
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 1.7e-06 60.1 197 25.9
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.7e-06 60.1 202 25.7
arahy.Tifrunner.gnm1.ann1.264L58 Arachis hypogaea HOM05D007562 ORTHO05D009721 2.2e-06 59.7 109 32.1
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 2.2e-06 59.7 201 25.9
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 2.2e-06 59.7 77 36.4
Rhsim09G0152200 Rhododendron simsii HOM05D007562 ORTHO05D009721 2.2e-06 59.7 97 36.1
Cpa.g.sc53.79 Carica papaya HOM05D007562 ORTHO05D009721 2.9e-06 59.3 106 35.8
Ciclev10033298m.g Citrus clementina HOM05D007562 ORTHO05D009721 2.9e-06 59.3 191 29.3
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 2.9e-06 59.3 198 26.8
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 2.9e-06 59.3 136 30.1
CiPaw.01G273100 Carya illinoinensis HOM05D007562 ORTHO05D009721 3.7e-06 58.9 103 35.0
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 4.9e-06 58.5 189 29.1
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 6.4e-06 58.2 78 42.3
Lalb_Chr19g0129691 Lupinus albus HOM05D007562 ORTHO05D009721 8.3e-06 57.8 132 25.8
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 8.3e-06 57.8 96 35.4
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 8.3e-06 57.8 160 28.8


User provided reference genes

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