Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.0e-173 611.7 298 100.0
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 2.5e-50 203.4 203 50.2
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 9.4e-50 201.4 293 38.2
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 1.6e-49 200.7 284 39.4
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 1.6e-49 200.7 264 42.0
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 2.7e-49 199.9 296 38.5
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 2.7e-49 199.9 267 40.1
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 3.6e-49 199.5 314 36.3
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 4.7e-49 199.1 293 37.9
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 1.4e-48 197.6 269 39.8
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 1.4e-48 197.6 267 39.0
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.8e-48 197.2 300 37.0
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 2.3e-48 196.8 297 37.4
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 4.0e-48 196.1 291 37.8
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 5.2e-48 195.7 263 40.7
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 6.8e-48 195.3 263 39.5
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 6.8e-48 195.3 288 37.5
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 8.8e-48 194.9 288 37.2
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 8.8e-48 194.9 305 36.4
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 8.8e-48 194.9 270 39.6
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 8.8e-48 194.9 267 40.1
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.2e-47 194.5 309 36.6
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.2e-47 194.5 309 36.6
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.2e-47 194.5 309 36.6
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 1.2e-47 194.5 306 36.3
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 1.2e-47 194.5 287 38.0
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.2e-47 194.5 291 39.2
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.2e-47 194.5 280 37.9
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 1.5e-47 194.1 299 36.8
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.5e-47 194.1 293 37.5
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 1.5e-47 194.1 265 39.2
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.5e-47 194.1 288 37.2
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.5e-47 194.1 263 40.7
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.5e-47 194.1 272 37.5
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 1.5e-47 194.1 268 39.6
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.5e-47 194.1 263 40.7
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 1.5e-47 194.1 282 36.5
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 2.0e-47 193.7 271 38.7
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 2.0e-47 193.7 260 39.2
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 2.0e-47 193.7 270 38.9
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 2.0e-47 193.7 280 39.3
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 2.6e-47 193.4 273 37.7
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-47 193.4 273 37.7
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-47 193.4 273 37.7
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 2.6e-47 193.4 273 37.7
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 2.6e-47 193.4 273 37.7
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.6e-47 193.4 264 37.9
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.6e-47 193.4 263 40.3
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.6e-47 193.4 263 40.3
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 2.6e-47 193.4 282 38.3
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 2.6e-47 193.4 280 38.6
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 2.6e-47 193.4 270 38.5
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 3.4e-47 193.0 281 38.4
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.4e-47 192.6 299 36.5
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 4.4e-47 192.6 263 39.5
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 4.4e-47 192.6 291 36.8
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 5.7e-47 192.2 279 37.6
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 5.7e-47 192.2 297 37.0
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 5.7e-47 192.2 273 39.9
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 7.5e-47 191.8 282 39.0
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 7.5e-47 191.8 305 36.1
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 7.5e-47 191.8 265 39.2
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 7.5e-47 191.8 287 37.6
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 9.8e-47 191.4 275 37.1
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 9.8e-47 191.4 264 39.0
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 1.3e-46 191.0 263 39.2
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.3e-46 191.0 297 37.0
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 1.3e-46 191.0 269 38.3
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 1.3e-46 191.0 269 38.3
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.3e-46 191.0 250 40.8
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.3e-46 191.0 264 39.0
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.3e-46 191.0 267 38.6
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.7e-46 190.7 265 38.9
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.7e-46 190.7 250 39.2
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.7e-46 190.7 279 37.6
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.7e-46 190.7 266 39.8
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.2e-46 190.3 267 37.8
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.2e-46 190.3 265 38.1
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 2.2e-46 190.3 286 37.1
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 2.2e-46 190.3 267 39.3
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 2.8e-46 189.9 300 37.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 2.8e-46 189.9 273 38.8
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 3.7e-46 189.5 286 36.0
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 3.7e-46 189.5 286 36.0
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 3.7e-46 189.5 284 37.3
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 3.7e-46 189.5 265 38.1
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.7e-46 189.5 285 37.2
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 3.7e-46 189.5 265 38.1
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 3.7e-46 189.5 264 39.0
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 3.7e-46 189.5 258 39.5
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 4.8e-46 189.1 272 38.6
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 4.8e-46 189.1 264 37.9
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 4.8e-46 189.1 258 40.3
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 4.8e-46 189.1 272 38.6
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 4.8e-46 189.1 288 37.8
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.8e-46 189.1 262 38.9
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.3e-46 188.7 265 38.5
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.3e-46 188.7 265 38.5
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 6.3e-46 188.7 268 38.8
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 6.3e-46 188.7 265 38.5
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 8.3e-46 188.3 265 38.9
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 8.3e-46 188.3 265 38.1
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 8.3e-46 188.3 277 37.9
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 8.3e-46 188.3 254 39.0
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 8.3e-46 188.3 249 41.0
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.1e-45 188.0 268 38.8
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 1.1e-45 188.0 271 38.0
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.4e-45 187.6 271 37.3
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 1.4e-45 187.6 265 37.7
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.4e-45 187.6 267 36.7
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.4e-45 187.6 267 36.7
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.4e-45 187.6 265 37.7
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.8e-45 187.2 281 37.7
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 1.8e-45 187.2 274 37.2
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.4e-45 186.8 265 38.1
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.4e-45 186.8 265 37.4
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 3.1e-45 186.4 291 35.7
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 3.1e-45 186.4 263 39.9
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 4.1e-45 186.0 268 38.1
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 4.1e-45 186.0 265 37.4
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 4.1e-45 186.0 264 38.3
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 5.4e-45 185.7 264 38.3
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 7.0e-45 185.3 262 37.4
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 7.0e-45 185.3 262 37.0
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.0e-45 185.3 265 38.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 7.0e-45 185.3 263 38.0
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 7.0e-45 185.3 266 37.6
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 7.0e-45 185.3 265 38.1
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 7.0e-45 185.3 277 39.0
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 7.0e-45 185.3 277 39.0
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 9.1e-45 184.9 262 37.0
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 9.1e-45 184.9 280 38.2
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.6e-44 184.1 299 35.1
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.6e-44 184.1 265 37.0
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.6e-44 184.1 265 37.7
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 1.6e-44 184.1 271 36.2
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.6e-44 184.1 260 37.3
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 2.0e-44 183.7 263 39.2
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.0e-44 183.7 262 38.9
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 3.5e-44 183.0 271 36.5
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 4.5e-44 182.6 175 50.3
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 5.0e-43 179.1 254 39.0
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 6.1e-41 172.2 338 32.5
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 1.8e-40 170.6 183 47.5
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 3.4e-39 166.4 272 33.5
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 8.3e-38 161.8 259 34.7
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 7.0e-37 158.7 160 48.8
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.0e-35 154.8 265 35.8
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 4.3e-34 149.4 209 39.2
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.6e-33 147.5 194 41.2
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.6e-25 120.9 174 36.8
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 8.0e-25 118.6 153 38.6
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 5.8e-23 112.5 150 38.0
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 5.8e-23 112.5 150 38.0
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 7.5e-23 112.1 160 33.8
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.2e-17 92.4 99 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 2.3e-16 90.5 97 48.5
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 5.8e-15 85.9 110 39.1
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 7.3e-10 68.9 57 52.6
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-08 65.1 47 53.2
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 3.1e-08 63.5 47 51.1
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 6.8e-08 62.4 47 48.9


User provided reference genes

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