Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 0.0e+00 2491.8 1290 100.0
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 2.6e-253 879.8 1368 39.3
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 3.2e-251 872.8 1336 38.5
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 6.0e-242 842.0 1334 38.7
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 1.1e-227 794.7 1340 36.6
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 3.3e-208 729.9 1174 36.3
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 2.2e-196 690.6 1194 36.5
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 2.2e-196 690.6 1315 33.6
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 9.3e-195 685.3 1318 33.5
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 4.6e-194 682.9 1226 34.8
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 1.8e-193 681.0 1315 33.9
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 1.1e-192 678.3 1210 34.8
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 1.1e-192 678.3 1206 34.0
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 1.5e-192 677.9 1319 33.4
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 1.9e-192 677.6 1314 33.7
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 2.5e-192 677.2 1214 35.0
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 4.3e-192 676.4 1313 33.8
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 1.6e-191 674.5 1331 32.7
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 1.6e-191 674.5 1314 33.6
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 2.1e-191 674.1 1327 33.8
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 3.7e-191 673.3 1310 32.9
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 8.2e-191 672.2 1327 33.9
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 1.4e-190 671.4 1316 33.1
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 1.4e-190 671.4 1331 32.7
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.8e-190 671.0 1318 33.0
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 1.8e-190 671.0 1202 34.3
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 6.9e-190 669.1 1228 34.6
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 9.0e-190 668.7 1336 33.2
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 1.5e-189 667.9 1330 33.7
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 2.6e-189 667.2 1326 33.3
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 3.4e-189 666.8 1320 33.0
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 4.5e-189 666.4 1321 33.2
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 4.5e-189 666.4 1323 33.3
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 7.6e-189 665.6 1306 33.3
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 1.0e-188 665.2 1202 33.9
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 1.0e-188 665.2 1317 33.0
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 1.3e-188 664.8 1200 33.8
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 1.7e-188 664.5 1331 33.1
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 1.7e-188 664.5 1316 32.5
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 2.9e-188 663.7 1205 35.2
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 3.8e-188 663.3 1331 33.6
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 6.5e-188 662.5 1222 34.0
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 1.1e-187 661.8 1205 34.1
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 1.4e-187 661.4 1335 32.8
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 3.2e-187 660.2 1262 33.4
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 3.2e-187 660.2 1336 33.5
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 4.2e-187 659.8 1194 34.1
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.5e-187 659.4 1324 33.2
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 5.5e-187 659.4 1365 32.6
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 7.2e-187 659.1 1334 33.0
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 1.2e-186 658.3 1328 32.7
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 1.2e-186 658.3 1206 34.5
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 1.6e-186 657.9 1210 34.1
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 2.1e-186 657.5 1211 34.4
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 2.1e-186 657.5 1190 33.9
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 2.7e-186 657.1 1206 34.5
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 4.6e-186 656.4 1317 33.6
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 6.1e-186 656.0 1202 33.3
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 6.1e-186 656.0 1317 32.0
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 6.1e-186 656.0 1273 33.4
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 7.9e-186 655.6 1327 32.9
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 1.0e-185 655.2 1338 33.1
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 1.3e-185 654.8 1324 33.2
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 1.3e-185 654.8 1200 33.7
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 1.3e-185 654.8 1329 32.7
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 1.8e-185 654.4 1200 34.8
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 2.3e-185 654.1 1319 33.1
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 3.9e-185 653.3 1202 33.7
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 3.9e-185 653.3 1199 33.8
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.9e-185 653.3 1356 33.0
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 6.7e-185 652.5 1316 32.4
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 3.3e-184 650.2 1324 33.1
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 4.3e-184 649.8 1344 33.0
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 1.3e-183 648.3 1279 33.5
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 2.2e-183 647.5 1309 33.1
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 2.8e-183 647.1 1270 34.1
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 8.2e-183 645.6 1352 32.8
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 1.8e-182 644.4 1215 34.0
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 5.3e-182 642.9 1318 32.2
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 1.5e-181 641.3 1276 33.2
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 2.0e-181 641.0 1320 32.8
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 1.3e-180 638.3 1323 32.2
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 3.8e-180 636.7 1297 33.1
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 5.0e-180 636.3 1312 32.0
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 2.5e-179 634.0 1319 31.7
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 1.0e-177 628.6 1004 37.2
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.5e-176 624.8 1268 32.3
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 2.5e-176 624.0 1279 31.8
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 3.3e-176 623.6 1319 31.9
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 4.3e-176 623.2 1315 32.3
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.3e-172 611.7 1343 31.1
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 1.7e-172 611.3 1339 31.6
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 2.2e-172 610.9 1319 31.2
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 9.4e-171 605.5 1354 31.2
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 2.3e-169 600.9 1214 33.0
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 2.3e-169 600.9 1147 33.0
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 5.1e-169 599.7 1363 30.7
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 8.8e-169 599.0 1318 31.0
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 2.0e-168 597.8 1390 30.2
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 9.1e-166 589.0 1331 31.0
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 4.5e-165 586.6 1312 31.4
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.5e-163 581.6 1399 29.5
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 2.7e-162 577.4 1319 30.3
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 3.0e-161 573.9 1221 31.4
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 1.3e-159 568.5 1288 30.0
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 4.8e-159 566.6 1204 31.5
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 6.3e-159 566.2 1198 32.1
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 3.8e-156 557.0 1204 31.3
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 1.5e-155 555.1 1209 32.2
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 3.5e-149 533.9 1170 31.5
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 8.5e-148 529.3 1235 29.8
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 1.2e-146 525.4 1385 29.2
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 2.2e-143 514.6 1316 29.1
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 4.1e-142 510.4 998 33.0
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 3.6e-138 497.3 1318 28.2
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.5e-133 480.7 672 40.9
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 3.3e-123 447.6 1458 26.7
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 1.3e-119 435.6 1126 29.6
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 2.7e-101 374.8 1194 25.9
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 3.4e-96 357.8 454 43.6
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 1.3e-95 355.9 387 47.3
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.3e-84 319.3 1114 25.0
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 9.3e-78 296.6 947 26.0
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 5.3e-73 280.8 890 27.1
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 5.5e-70 270.8 872 25.6
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 8.7e-68 263.5 859 25.1
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 6.9e-65 253.8 687 28.7
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 1.6e-61 242.7 369 38.8
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 5.2e-44 184.5 298 36.9
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 2.6e-43 182.2 194 47.9
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 7.5e-43 180.6 713 24.8
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 1.3e-42 179.9 271 40.2
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.9e-40 171.0 412 31.8
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 2.9e-39 168.7 178 48.3
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 3.0e-36 158.7 567 24.3
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 2.7e-32 145.6 300 35.0
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 2.1e-29 136.0 639 23.6
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 2.6e-27 129.0 153 44.4
CDE05G2526 Ceratophyllum demersum HOM05D003993 ORTHO05D005336 1.7e-23 116.3 100 54.0
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.5e-22 113.2 420 25.5
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 2.5e-22 112.5 111 46.8
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 9.5e-22 110.5 172 37.2
SHI50190 Sapria himalayana HOM05D003993 ORTHO05D005336 5.2e-20 104.8 132 43.9
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 4.4e-19 101.7 173 38.2
MBI18_g40553_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 1.2e-16 93.6 72 56.9
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 2.0e-16 92.8 296 27.4
VMungo1127G0084 Vigna mungo HOM05D003993 ORTHO05D005336 1.3e-15 90.1 99 42.4
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 9.5e-14 84.0 181 32.0
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 2.8e-13 82.4 313 25.2
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 6.0e-08 64.7 83 39.8


User provided reference genes

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