Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.2e-292 1009.2 553 100.0
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 3.2e-200 702.2 552 70.1
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 5.5e-112 409.1 361 58.2
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 4.8e-108 396.0 346 58.4
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 3.8e-105 386.3 368 55.7
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 9.8e-101 371.7 376 51.9
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 9.2e-99 365.2 354 53.4
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 5.9e-98 362.5 368 52.7
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.0e-97 361.7 368 50.5
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 2.3e-97 360.5 355 52.7
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 3.3e-96 356.7 354 52.3
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 3.3e-96 356.7 354 52.3
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 5.6e-96 355.9 362 51.1
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 9.5e-96 355.1 374 51.9
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 9.5e-96 355.1 358 51.4
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 1.6e-95 354.4 373 49.3
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 1.6e-95 354.4 350 52.3
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 2.8e-95 353.6 367 49.6
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 4.7e-95 352.8 350 50.6
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 6.1e-95 352.4 350 51.1
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 8.0e-95 352.1 377 48.5
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.4e-94 351.3 371 48.5
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 1.4e-94 351.3 354 51.7
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.8e-94 350.9 382 49.2
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 3.0e-94 350.1 354 51.7
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 5.2e-94 349.4 355 50.7
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 6.8e-94 349.0 371 49.3
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 6.8e-94 349.0 363 50.4
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 8.9e-94 348.6 350 51.1
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 1.2e-93 348.2 361 51.2
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 1.2e-93 348.2 378 48.9
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 4.4e-93 346.3 354 50.8
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 5.7e-93 345.9 361 50.1
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 7.5e-93 345.5 366 49.7
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 9.8e-93 345.1 382 47.9
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 9.8e-93 345.1 354 50.8
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.9e-92 343.6 366 48.1
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.9e-92 343.6 353 50.4
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 2.9e-92 343.6 359 49.6
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 3.7e-92 343.2 358 50.3
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 4.9e-92 342.8 369 49.1
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 6.4e-92 342.4 362 50.6
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 6.4e-92 342.4 364 49.2
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 8.3e-92 342.0 361 49.3
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 8.3e-92 342.0 350 51.1
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 8.3e-92 342.0 355 50.4
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.1e-91 341.7 360 49.4
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.4e-91 341.3 364 49.2
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.8e-91 340.9 357 49.6
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.8e-91 340.9 361 49.6
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.8e-91 340.9 375 47.7
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 1.8e-91 340.9 360 49.4
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.8e-91 340.9 360 49.4
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 1.8e-91 340.9 350 49.7
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 2.4e-91 340.5 390 50.0
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 2.4e-91 340.5 400 46.0
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 3.2e-91 340.1 378 48.7
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 4.1e-91 339.7 360 47.5
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 9.2e-91 338.6 350 49.7
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.2e-90 338.2 352 48.3
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 1.6e-90 337.8 360 48.6
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 2.0e-90 337.4 354 49.7
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 2.0e-90 337.4 388 47.9
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 2.0e-90 337.4 383 48.0
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.7e-90 337.0 354 51.1
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 2.7e-90 337.0 368 48.4
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 4.6e-90 336.3 368 48.1
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 5.9e-90 335.9 361 50.1
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.0e-89 335.1 356 48.9
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 1.0e-89 335.1 353 49.3
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 1.3e-89 334.7 353 48.7
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 1.3e-89 334.7 368 47.8
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 1.3e-89 334.7 353 48.7
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 1.3e-89 334.7 350 50.0
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 1.7e-89 334.3 350 49.7
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 1.7e-89 334.3 353 48.4
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 3.9e-89 333.2 365 47.4
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 5.0e-89 332.8 356 49.2
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 5.0e-89 332.8 351 49.6
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 8.6e-89 332.0 367 50.1
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 8.6e-89 332.0 354 50.0
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 8.6e-89 332.0 352 51.1
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 3.3e-88 330.1 362 47.8
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 7.3e-88 328.9 353 49.3
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 7.3e-88 328.9 353 49.3
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 7.3e-88 328.9 353 48.2
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 9.5e-88 328.6 383 46.5
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 3.6e-87 326.6 385 47.0
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.4e-86 324.7 361 47.6
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 4.0e-86 323.2 382 46.3
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 2.6e-85 320.5 342 48.8
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.4e-85 320.1 362 47.0
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 1.3e-84 318.2 360 46.1
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.7e-84 317.8 359 47.4
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 1.4e-83 314.7 357 46.8
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 2.7e-82 310.5 299 50.8
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.3e-81 308.1 330 49.7
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 2.3e-78 297.4 362 46.1
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.9e-76 290.4 379 43.3
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 6.4e-76 289.3 285 51.2
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 4.1e-75 286.6 354 44.4
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.2e-74 285.0 256 52.3
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 1.2e-74 285.0 256 53.9
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 2.7e-74 283.9 290 51.7
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 4.6e-74 283.1 397 40.6
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.0e-69 267.7 269 50.2
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.4e-69 266.5 254 52.4
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.3e-68 265.0 345 44.9
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 1.0e-65 255.4 267 49.8
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.0e-62 243.4 288 45.8
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.9e-59 234.6 246 52.0
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 4.2e-59 233.4 248 50.4
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 9.3e-59 232.3 244 48.0
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 6.9e-54 216.1 297 41.1
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.8e-33 148.3 357 30.5
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 8.7e-33 146.0 173 46.8
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 3.3e-32 144.1 361 30.2
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 4.8e-31 140.2 267 32.6
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 8.2e-31 139.4 234 38.0
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 3.1e-30 137.5 369 29.0
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 2.4e-22 111.3 219 33.8
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 5.0e-20 103.6 213 31.5
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.0e-17 95.9 120 40.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 3.9e-17 94.0 58 67.2
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 2.0e-16 91.7 87 48.3
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 9.1e-14 82.8 123 36.6
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 4.5e-13 80.5 141 38.3
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 1.3e-07 62.4 108 42.6
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 1.4e-06 58.9 103 39.8
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 1.4e-06 58.9 95 43.2
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.1e-06 57.8 74 47.3


User provided reference genes

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