Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 1.5e-89 332.8 167 100.0
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 8.2e-27 124.4 165 39.4
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 2.9e-24 115.9 165 43.6
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 2.9e-24 115.9 155 40.0
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 5.0e-24 115.2 165 43.6
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 8.5e-24 114.4 180 36.1
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 1.4e-23 113.6 126 46.0
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 1.9e-23 113.2 152 40.1
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 7.2e-23 111.3 165 41.2
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 2.7e-22 109.4 172 38.4
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 3.6e-22 109.0 165 43.0
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 3.6e-22 109.0 126 41.3
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 4.7e-22 108.6 98 54.1
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 4.7e-22 108.6 165 42.4
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 4.7e-22 108.6 167 37.1
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 4.7e-22 108.6 138 43.5
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 8.0e-22 107.8 172 38.4
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.0e-21 107.5 114 43.9
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 1.0e-21 107.5 139 41.0
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 1.0e-21 107.5 147 42.2
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 1.0e-21 107.5 169 40.2
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 1.4e-21 107.1 114 43.0
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 1.4e-21 107.1 180 35.6
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 2.3e-21 106.3 126 44.4
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.3e-21 106.3 170 38.2
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 2.3e-21 106.3 170 38.2
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 3.0e-21 105.9 180 36.1
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 3.0e-21 105.9 133 43.6
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 3.0e-21 105.9 176 36.4
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 3.9e-21 105.5 100 51.0
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 3.9e-21 105.5 135 43.7
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 5.2e-21 105.1 130 40.0
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 5.2e-21 105.1 138 41.3
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 5.2e-21 105.1 176 38.1
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 6.7e-21 104.8 102 52.0
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 6.7e-21 104.8 120 45.8
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 6.7e-21 104.8 150 36.7
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 6.7e-21 104.8 101 51.5
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 1.1e-20 104.0 127 43.3
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 1.1e-20 104.0 171 37.4
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 1.1e-20 104.0 120 49.2
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 1.1e-20 104.0 154 39.0
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 1.5e-20 103.6 119 46.2
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 1.5e-20 103.6 140 44.3
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 1.5e-20 103.6 114 48.2
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 1.5e-20 103.6 126 41.3
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 1.5e-20 103.6 154 39.0
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 1.5e-20 103.6 158 39.2
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 2.0e-20 103.2 171 33.3
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 2.0e-20 103.2 126 41.3
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 2.0e-20 103.2 154 39.0
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 2.6e-20 102.8 173 38.7
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 2.6e-20 102.8 167 37.1
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 2.6e-20 102.8 100 51.0
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 2.6e-20 102.8 110 44.5
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 3.3e-20 102.4 100 52.0
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 3.3e-20 102.4 175 34.3
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 3.3e-20 102.4 175 34.3
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 3.3e-20 102.4 119 46.2
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 3.3e-20 102.4 173 38.7
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 3.3e-20 102.4 126 43.7
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 4.4e-20 102.1 92 55.4
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 5.7e-20 101.7 171 39.2
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 5.7e-20 101.7 174 35.6
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 5.7e-20 101.7 170 38.8
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 7.4e-20 101.3 163 36.8
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 7.4e-20 101.3 169 37.9
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 7.4e-20 101.3 97 52.6
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 7.4e-20 101.3 126 44.4
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 7.4e-20 101.3 173 37.6
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 7.4e-20 101.3 127 41.7
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 9.7e-20 100.9 168 39.3
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 9.7e-20 100.9 99 50.5
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 9.7e-20 100.9 147 40.1
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 9.7e-20 100.9 179 37.4
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 9.7e-20 100.9 181 34.8
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 2.2e-19 99.8 178 35.4
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 3.7e-19 99.0 155 40.0
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 3.7e-19 99.0 158 39.9
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 6.3e-19 98.2 169 36.1
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 1.1e-18 97.4 147 39.5
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 2.4e-18 96.3 111 46.8
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 2.4e-18 96.3 100 50.0
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 7.0e-18 94.7 100 50.0
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 9.1e-18 94.4 169 37.3
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 9.1e-18 94.4 169 37.3
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 1.6e-17 93.6 100 48.0
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 1.6e-17 93.6 186 34.9
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 7.7e-17 91.3 100 48.0
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.7e-16 90.1 172 38.4
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 1.7e-16 90.1 179 34.6
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 2.9e-16 89.4 89 47.2
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 3.8e-16 89.0 114 43.9
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 6.5e-16 88.2 180 37.2
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 1.1e-15 87.4 87 48.3
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 2.5e-15 86.3 83 55.4
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 4.2e-15 85.5 73 52.1
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 2.7e-14 82.8 135 37.0
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 5.2e-13 78.6 185 32.4
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 1.5e-12 77.0 142 34.5
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.3e-12 75.9 135 34.1
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 5.7e-12 75.1 186 31.7
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.7e-12 75.1 70 50.0
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 7.5e-12 74.7 173 34.1
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 7.5e-12 74.7 201 29.9
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 1.3e-11 73.9 139 36.7
Cre09.g401150 Chlamydomonas reinhardtii HOM05D006936 ORTHO05D008273 1.1e-10 70.9 159 32.7
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 7.0e-10 68.2 60 51.7
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 2.0e-09 66.6 118 35.6
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 2.2e-08 63.2 65 52.3
PRCOL_00006382 Prasinoderma coloniale HOM05D006936 ORTHO05D008273 8.0e-06 54.7 158 29.1


User provided reference genes

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