Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 1.2e-267 926.0 481 100.0
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 3.3e-68 263.5 454 37.0
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 1.9e-63 247.7 312 45.8
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 7.0e-63 245.7 393 39.2
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 6.0e-62 242.7 291 45.0
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.3e-61 241.5 393 38.7
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 3.0e-61 240.4 303 42.2
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 3.0e-61 240.4 384 38.8
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 6.6e-61 239.2 303 43.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 6.6e-61 239.2 390 39.5
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.1e-60 238.4 385 37.9
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 7.3e-60 235.7 387 38.0
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 2.8e-59 233.8 306 42.8
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.1e-58 231.9 397 37.0
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 4.0e-58 229.9 287 44.6
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 4.0e-58 229.9 311 42.4
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 1.5e-57 228.0 308 42.2
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 1.5e-57 228.0 339 39.2
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 2.0e-57 227.6 359 38.7
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 2.0e-57 227.6 362 38.7
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 2.6e-57 227.3 367 37.3
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.4e-57 226.9 358 40.8
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 4.4e-57 226.5 315 40.3
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 5.8e-57 226.1 324 41.4
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 5.8e-57 226.1 390 36.7
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 5.8e-57 226.1 383 38.1
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 7.5e-57 225.7 303 42.9
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.8e-57 225.3 306 40.8
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 9.8e-57 225.3 306 40.8
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.3e-56 224.9 342 40.4
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 2.2e-56 224.2 337 40.9
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 2.2e-56 224.2 306 40.5
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 2.2e-56 224.2 305 42.0
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 4.9e-56 223.0 347 38.6
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 8.3e-56 222.2 316 39.2
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 8.3e-56 222.2 406 38.2
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 1.4e-55 221.5 380 37.1
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.4e-55 221.5 387 37.7
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 1.9e-55 221.1 389 36.0
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 2.4e-55 220.7 398 37.7
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.4e-55 220.7 364 37.6
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 3.2e-55 220.3 357 38.7
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 4.1e-55 219.9 373 37.5
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 5.4e-55 219.5 405 35.6
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 5.4e-55 219.5 402 36.8
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 9.2e-55 218.8 402 36.8
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 2.1e-54 217.6 386 37.3
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 2.1e-54 217.6 288 41.3
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 2.7e-54 217.2 307 40.4
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 2.7e-54 217.2 367 38.4
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 3.5e-54 216.9 352 41.2
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 4.6e-54 216.5 388 38.7
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 7.8e-54 215.7 291 39.9
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.0e-53 215.3 381 38.8
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.7e-53 214.5 372 36.0
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 3.0e-53 213.8 388 35.3
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 3.0e-53 213.8 377 36.9
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 5.1e-53 213.0 373 36.5
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 6.6e-53 212.6 385 36.6
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 8.6e-53 212.2 320 39.4
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 8.6e-53 212.2 383 37.1
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 8.6e-53 212.2 381 37.8
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.5e-52 211.5 373 36.7
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 1.5e-52 211.5 339 40.7
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.9e-52 211.1 378 37.0
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 9.5e-52 208.8 385 36.6
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 9.5e-52 208.8 385 36.6
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 1.2e-51 208.4 385 36.6
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.2e-51 208.4 287 41.5
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 1.6e-51 208.0 385 36.6
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.1e-51 207.6 432 35.0
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 4.7e-51 206.5 405 35.3
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 3.1e-50 203.8 376 34.3
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 8.9e-50 202.2 259 42.5
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.2e-49 201.8 251 43.4
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 3.4e-49 200.3 381 34.6
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 4.4e-49 199.9 303 38.9
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 4.4e-49 199.9 333 37.8
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 5.8e-49 199.5 385 35.1
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.3e-48 198.4 393 32.8
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.2e-48 197.6 370 34.9
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.4e-47 194.9 445 33.9
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 1.9e-47 194.5 326 38.7
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 2.4e-47 194.1 379 34.8
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 9.2e-47 192.2 383 36.6
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.6e-46 191.4 374 35.8
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 2.7e-46 190.7 307 39.1
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 3.5e-46 190.3 413 32.4
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 5.1e-45 186.4 234 43.2
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 4.3e-44 183.3 293 36.2
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 5.6e-44 183.0 220 44.1
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 7.3e-44 182.6 242 41.3
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 1.8e-42 177.9 216 43.5
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 2.4e-42 177.6 228 40.4
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 4.0e-42 176.8 388 34.3
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 8.9e-42 175.6 380 33.4
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.5e-41 174.9 195 45.6
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 4.9e-40 169.9 305 36.1
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 5.4e-39 166.4 208 43.8
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.3e-37 161.0 220 42.7
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.5e-28 131.7 167 41.3
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 4.0e-26 123.6 177 39.0
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 3.4e-25 120.6 372 28.8
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 4.9e-24 116.7 102 53.9
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.1e-23 112.8 100 52.0
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 4.0e-18 97.1 207 31.9
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.3e-18 96.7 144 36.8
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 4.5e-17 93.6 283 26.5
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.8e-16 90.5 127 37.8
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 6.0e-14 83.2 262 26.7
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 6.0e-14 83.2 165 32.1
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 1.8e-13 81.6 195 33.3
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 8.7e-13 79.3 95 44.2
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 2.8e-11 74.3 134 35.1
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 4.8e-11 73.6 93 40.9
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.5e-09 67.0 52 55.8
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.5e-09 67.0 58 51.7
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 2.9e-08 64.3 52 53.8
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 6.1e-06 56.6 104 31.7


User provided reference genes

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