Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 6.2e-258 893.6 467 100.0
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 9.8e-70 268.5 329 47.4
MCO15G091 Micromonas commoda HOM05D036318 ORTHO05D005510 8.4e-29 132.5 432 31.0
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.5e-22 111.7 328 29.6
PRCOL_00004707 Prasinoderma coloniale HOM05D036318 ORTHO05D005510 1.7e-21 108.2 319 31.7
PRCOL_00004141 Prasinoderma coloniale HOM05D036318 ORTHO05D005510 6.5e-13 79.7 254 29.5
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 1.1e-12 79.0 258 27.9
Cre03.g179750 Chlamydomonas reinhardtii HOM05D028620 ORTHO05D005510 2.5e-12 77.8 159 32.1
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 2.1e-11 74.7 262 27.1
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 3.6e-11 73.9 256 28.5
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 2.3e-10 71.2 252 28.2
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 2.3e-10 71.2 248 27.4
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 3.9e-10 70.5 249 25.7
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 5.1e-10 70.1 252 29.4
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 8.8e-10 69.3 260 26.9
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 1.1e-09 68.9 257 27.2
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 1.5e-09 68.6 257 26.5
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.5e-09 68.6 257 26.5
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 1.5e-09 68.6 260 28.1
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 1.5e-09 68.6 255 29.4
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 2.0e-09 68.2 250 26.8
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 2.5e-09 67.8 261 27.6
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 2.5e-09 67.8 254 27.2
Cre08.g372300 Chlamydomonas reinhardtii HOM05D028620 ORTHO05D005510 3.3e-09 67.4 149 30.2
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 3.3e-09 67.4 248 27.4
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 3.3e-09 67.4 246 25.6
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 5.7e-09 66.6 257 26.5
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 5.7e-09 66.6 254 26.0
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.4e-09 66.2 256 25.4
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 9.7e-09 65.9 254 26.8
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 9.7e-09 65.9 241 25.7
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 9.7e-09 65.9 260 27.7
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.3e-08 65.5 338 25.7
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 1.3e-08 65.5 260 27.7
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 1.3e-08 65.5 252 26.2
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.3e-08 65.5 255 28.2
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 2.2e-08 64.7 250 26.0
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.8e-08 64.3 257 25.3
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 2.8e-08 64.3 256 28.1
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 3.7e-08 63.9 252 25.4
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 3.7e-08 63.9 255 25.9
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 3.7e-08 63.9 255 28.2
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 4.8e-08 63.5 256 27.3
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 4.8e-08 63.5 245 26.5
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 4.8e-08 63.5 254 26.0
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 6.3e-08 63.2 252 27.4
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 6.3e-08 63.2 249 26.1
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 6.3e-08 63.2 253 26.5
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 8.2e-08 62.8 254 26.0
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 8.2e-08 62.8 253 26.1
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 1.1e-07 62.4 253 28.9
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.1e-07 62.4 254 24.8
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 1.1e-07 62.4 260 27.3
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 1.1e-07 62.4 251 26.7
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 1.1e-07 62.4 246 25.6
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.4e-07 62.0 257 25.3
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 1.4e-07 62.0 257 24.9
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 1.4e-07 62.0 251 25.1
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.4e-07 62.0 244 25.8
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 1.8e-07 61.6 254 25.6
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.8e-07 61.6 260 27.3
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 1.8e-07 61.6 251 26.7
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 2.4e-07 61.2 251 24.7
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 2.4e-07 61.2 252 27.4
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.4e-07 61.2 253 25.7
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.4e-07 61.2 253 25.7
Cre14.g608788 Chlamydomonas reinhardtii HOM05D028620 ORTHO05D005510 3.1e-07 60.8 79 40.5
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 3.1e-07 60.8 253 23.3
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 3.1e-07 60.8 243 28.8
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 4.1e-07 60.5 259 27.8
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 4.1e-07 60.5 255 27.1
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 4.1e-07 60.5 254 27.2
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.1e-07 60.5 248 24.6
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 4.1e-07 60.5 246 29.7
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.3e-07 60.1 260 26.5
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 5.3e-07 60.1 253 25.7
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 5.3e-07 60.1 223 26.9
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 6.9e-07 59.7 266 29.3
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 9.1e-07 59.3 260 25.4
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.2e-06 58.9 254 24.8
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 1.5e-06 58.5 253 23.7
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 2.0e-06 58.2 257 27.2
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.0e-06 58.2 253 22.5
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.0e-06 58.2 257 26.8
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.0e-06 58.2 257 26.8
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.6e-06 57.8 274 24.8
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 4.5e-06 57.0 250 28.0
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 5.9e-06 56.6 251 23.9


User provided reference genes

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