Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.1e-306 1055.8 530 100.0
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.2e-228 796.6 500 80.4
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.5e-183 646.7 509 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.3e-174 614.4 471 62.6
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 1.8e-173 613.2 510 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 7.0e-173 611.3 471 62.6
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 2.7e-172 609.4 459 63.6
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 8.6e-171 604.4 488 60.7
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 1.9e-170 603.2 488 60.7
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 5.6e-170 601.7 431 65.2
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 7.3e-170 601.3 430 65.3
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.8e-169 599.4 430 66.0
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 3.6e-169 599.0 464 62.1
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.6e-169 599.0 425 67.8
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 1.0e-168 597.4 448 63.6
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 1.8e-168 596.7 428 65.7
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 3.1e-168 595.9 429 66.7
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.1e-168 595.9 431 64.7
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 6.8e-168 594.7 430 65.6
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 8.9e-168 594.3 432 65.7
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.6e-167 592.8 428 65.2
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 3.4e-167 592.4 430 65.1
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 4.4e-167 592.0 524 57.3
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 7.5e-167 591.3 460 62.0
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 9.8e-167 590.9 452 62.2
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.2e-166 589.7 463 61.6
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.7e-166 589.0 441 63.7
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 3.7e-166 589.0 493 58.6
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 4.9e-166 588.6 542 56.3
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 4.9e-166 588.6 433 65.1
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 8.3e-166 587.8 516 56.4
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 8.3e-166 587.8 433 64.9
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.1e-165 587.4 432 65.5
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.9e-165 586.6 430 66.5
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 3.2e-165 585.9 442 63.3
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 4.1e-165 585.5 453 64.7
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 5.4e-165 585.1 433 65.1
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 7.0e-165 584.7 527 57.1
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 9.2e-165 584.3 430 65.1
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 9.2e-165 584.3 426 65.3
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 9.2e-165 584.3 431 65.0
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.7e-164 582.8 524 56.1
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.5e-164 582.4 493 57.6
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.3e-163 580.5 428 63.6
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.3e-163 580.5 513 56.1
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.7e-163 580.1 467 61.5
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 2.3e-163 579.7 432 63.4
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.3e-163 579.7 432 63.2
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 3.0e-163 579.3 513 56.1
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.0e-163 578.6 442 62.7
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.0e-163 578.6 526 56.7
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.1e-162 577.4 503 57.7
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.5e-162 577.0 420 65.0
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.5e-162 577.0 472 60.2
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 3.3e-162 575.9 489 58.5
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 4.3e-162 575.5 449 62.1
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 4.3e-162 575.5 432 62.7
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 4.3e-162 575.5 428 63.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 5.6e-162 575.1 511 57.3
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 7.3e-162 574.7 428 63.6
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 7.3e-162 574.7 424 65.3
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 9.5e-162 574.3 431 61.9
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 9.5e-162 574.3 436 63.5
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.2e-161 573.9 530 56.2
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 1.6e-161 573.5 431 62.6
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.1e-161 573.2 464 59.1
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 2.8e-161 572.8 457 60.4
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.8e-161 572.8 457 60.4
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 3.6e-161 572.4 506 57.5
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 3.6e-161 572.4 508 57.7
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 4.7e-161 572.0 424 62.0
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 6.2e-161 571.6 482 59.1
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 8.1e-161 571.2 431 63.8
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.1e-160 570.9 506 57.1
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.8e-160 570.1 460 60.0
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.8e-160 570.1 460 60.0
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 2.3e-160 569.7 438 61.9
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 3.1e-160 569.3 523 55.3
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 3.1e-160 569.3 427 62.3
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 4.0e-160 568.9 429 62.9
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 6.8e-160 568.2 427 63.5
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 6.8e-160 568.2 427 63.5
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.2e-159 567.4 431 62.4
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.2e-159 567.4 428 63.3
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.2e-159 567.4 504 57.1
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 3.4e-159 565.8 421 64.8
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 9.8e-159 564.3 453 60.3
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.3e-158 563.9 428 62.9
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.3e-158 563.9 428 62.9
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-158 563.5 428 62.6
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.7e-158 563.5 428 62.6
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.7e-158 563.5 428 62.6
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.7e-158 563.5 505 57.0
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.9e-158 562.8 511 56.4
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.1e-157 558.9 559 53.1
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 7.1e-157 558.1 524 55.2
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 7.1e-157 558.1 519 55.1
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 9.2e-157 557.8 524 55.0
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.6e-156 557.0 429 61.3
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 7.8e-156 554.7 428 62.9
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.0e-155 554.3 402 64.4
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 6.6e-155 551.6 428 63.3
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.6e-155 551.2 523 54.1
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.7e-153 545.4 523 53.7
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 4.7e-153 545.4 412 62.9
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.3e-152 543.1 428 61.0
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.8e-152 541.6 538 53.7
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 3.2e-149 532.7 516 53.9
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.3e-147 526.6 440 58.2
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 9.6e-146 521.2 544 51.1
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.6e-145 520.4 456 57.7
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 8.1e-145 518.1 504 53.2
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.3e-142 510.8 495 52.5
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.9e-141 506.9 495 54.7
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 5.4e-141 505.4 447 57.0
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.0e-139 501.1 427 57.6
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 2.3e-139 500.0 430 58.1
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.6e-137 493.8 526 51.9
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 3.1e-136 489.6 376 61.4
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 5.3e-136 488.8 431 59.2
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.8e-134 482.6 449 55.0
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.6e-132 477.2 582 45.5
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 7.9e-132 474.9 505 52.9
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.9e-130 470.3 359 63.8
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 4.3e-130 469.2 514 50.2
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 3.1e-128 463.0 521 49.5
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.9e-128 461.8 428 55.1
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.2e-127 461.1 525 49.3
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 2.0e-127 460.3 360 62.5
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.2e-126 456.8 505 50.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.9e-126 456.4 521 50.7
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 8.4e-126 454.9 331 67.1
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 3.2e-125 453.0 365 60.3
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.3e-123 447.6 376 57.4
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.0e-123 446.4 446 53.1
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.1e-117 427.9 324 64.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.5e-117 426.8 371 57.4
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.1e-116 423.7 465 50.3
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 4.6e-116 422.5 363 58.4
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 7.9e-116 421.8 397 56.4
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.5e-114 416.8 398 56.3
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 6.3e-113 412.1 443 50.1
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.9e-107 392.9 421 49.6
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.1e-106 391.3 403 51.9
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 2.2e-105 387.1 530 43.4
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.4e-101 374.4 296 61.1
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.8e-99 367.5 442 45.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 3.7e-97 359.8 298 62.4
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 1.2e-95 354.8 292 61.3
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 7.0e-80 302.4 211 65.9
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.8e-64 251.1 191 59.2
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 7.8e-63 245.7 302 48.3
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.5e-61 241.5 220 57.7
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 4.3e-61 240.0 162 63.0
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 4.7e-60 236.5 414 34.8
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 2.0e-58 231.1 142 68.3
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 7.0e-56 222.6 456 32.9
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 9.2e-56 222.2 191 62.8
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.0e-50 204.5 140 65.0
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.7e-46 191.4 156 59.0
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.3e-46 191.0 346 37.3
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.3e-41 175.3 133 67.7
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.1e-32 143.7 99 62.6
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.4e-24 116.7 228 33.3
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.1e-21 109.0 198 32.3
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.3e-14 85.5 164 39.0
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 5.1e-14 83.6 49 73.5
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 9.6e-13 79.3 49 65.3
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 2.8e-12 77.8 46 67.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.1e-08 65.9 64 48.4


User provided reference genes

Program Settings