Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_22830 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.2e-280 969.1 488 100.0
Pp3c9_23950 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.5e-233 812.8 476 86.1
Mapoly0155s0016 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.2e-157 559.7 509 61.7
Mapoly0035s0019 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.2e-141 506.5 502 56.0
Mapoly0008s0213 Marchantia polymorpha HOM05D007819 ORTHO05D009848 5.5e-140 501.9 507 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1297 Anthoceros agrestis HOM05D007819 ORTHO05D009848 3.8e-133 479.2 464 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3840 Anthoceros agrestis HOM05D007819 ORTHO05D009848 1.5e-132 477.2 454 59.0
PSO339G1273 Papaver somniferum HOM05D007819 ORTHO05D009848 8.7e-69 265.4 254 48.4
CANSAT54G2163 Cannabis sativa HOM05D007819 ORTHO05D009848 1.5e-68 264.6 255 51.0
Nn2g10668 Nelumbo nucifera HOM05D007819 ORTHO05D009848 2.5e-68 263.8 280 47.5
PSO384G2242 Papaver somniferum HOM05D007819 ORTHO05D009848 2.5e-68 263.8 254 48.0
PGR102G1079 Punica granatum HOM05D007819 ORTHO05D009848 3.3e-68 263.5 249 51.0
Manes.04G025500 Manihot esculenta HOM05D007819 ORTHO05D009848 5.6e-68 262.7 257 50.6
TAR623G0280 Trochodendron aralioides HOM05D007819 ORTHO05D009848 7.4e-68 262.3 256 49.2
Gohir.A09G105900 Gossypium hirsutum HOM05D007819 ORTHO05D009848 9.6e-68 261.9 249 50.2
Thecc.09G261200 Theobroma cacao HOM05D007819 ORTHO05D009848 1.3e-67 261.5 249 49.8
TWI75G0698 Tripterygium wilfordii HOM05D007819 ORTHO05D009848 1.6e-67 261.2 248 51.2
Gohir.D05G077600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.8e-67 260.4 250 49.2
Gorai.009G079100 Gossypium raimondii HOM05D007819 ORTHO05D009848 2.8e-67 260.4 250 49.2
COL.COLO4_25254 Corchorus olitorius HOM05D007819 ORTHO05D009848 4.8e-67 259.6 239 52.3
Oeu017391.1 Olea europaea HOM05D007819 ORTHO05D009848 6.2e-67 259.2 254 48.0
Cpa.g.sc318.6 Carica papaya HOM05D007819 ORTHO05D009848 8.1e-67 258.8 292 44.2
Gohir.A05G074800 Gossypium hirsutum HOM05D007819 ORTHO05D009848 1.1e-66 258.5 250 49.2
Gohir.D09G102600 Gossypium hirsutum HOM05D007819 ORTHO05D009848 2.4e-66 257.3 249 49.4
Gorai.006G121000 Gossypium raimondii HOM05D007819 ORTHO05D009848 2.4e-66 257.3 249 49.4
Atru.chr3.3713 Acer truncatum HOM05D007819 ORTHO05D009848 5.3e-66 256.1 254 49.2
Sopen06g001100 Solanum pennellii HOM05D007819 ORTHO05D009848 6.9e-66 255.8 282 47.9
Duzib168G1088 Durio zibethinus HOM05D007819 ORTHO05D009848 2.0e-65 254.2 264 47.7
Migut.N02626 Erythranthe guttata HOM05D007819 ORTHO05D009848 2.6e-65 253.8 272 47.4
CiPaw.13G106200 Carya illinoinensis HOM05D007819 ORTHO05D009848 4.5e-65 253.1 254 46.1
Gohir.A05G074866 Gossypium hirsutum HOM05D007819 ORTHO05D009848 4.5e-65 253.1 250 48.4
RcHm_v2.0_Chr5g0060991 Rosa chinensis HOM05D007819 ORTHO05D009848 1.0e-64 251.9 256 47.3
FAN21G3467 Fragaria x ananassa HOM05D007819 ORTHO05D009848 3.8e-64 250.0 250 47.6
Eucgr.B02464 Eucalyptus grandis HOM05D007819 ORTHO05D009848 8.4e-64 248.8 246 47.6
FAN25G2530 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.5e-63 247.3 267 45.7
CiPaw.14G077700 Carya illinoinensis HOM05D007819 ORTHO05D009848 1.2e-62 245.0 271 45.8
Cc01_g11630 Coffea canephora HOM05D007819 ORTHO05D009848 3.5e-62 243.4 244 47.5
MD11G1124900 Malus domestica HOM05D007819 ORTHO05D009848 3.9e-61 240.0 265 43.0
Lsat_1_v5_gn_2_25861 Lactuca sativa HOM05D007819 ORTHO05D009848 1.1e-60 238.4 243 47.7
MD03G1111000 Malus domestica HOM05D007819 ORTHO05D009848 9.6e-60 235.3 247 44.9
Mapoly0103s0031 Marchantia polymorpha HOM05D007819 ORTHO05D009848 2.8e-59 233.8 306 42.5
Hma1.2p1_2033F.1_g311900 Hydrangea macrophylla HOM05D007819 ORTHO05D009848 1.4e-58 231.5 243 47.3
DCAR_005475 Daucus carota HOM05D007819 ORTHO05D009848 7.6e-57 225.7 211 51.2
Pp3c21_1570 Physcomitrium patens HOM05D007819 ORTHO05D009848 1.7e-56 224.6 285 44.2
CiPaw.13G106300 Carya illinoinensis HOM05D007819 ORTHO05D009848 2.9e-56 223.8 233 46.4
QL01p036876 Quercus lobata HOM05D007819 ORTHO05D009848 6.5e-56 222.6 276 40.9
CiPaw.14G077600 Carya illinoinensis HOM05D007819 ORTHO05D009848 7.2e-55 219.2 259 42.1
Nitab4.5_0007369g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 7.2e-55 219.2 278 40.6
unitig_699.g19198 Utricularia gibba HOM05D007819 ORTHO05D009848 1.6e-54 218.0 256 41.8
Nitab4.5_0000888g0180 Nicotiana tabacum HOM05D007819 ORTHO05D009848 2.7e-54 217.2 271 41.7
HPP92_025075 Vanilla planifolia HOM05D007819 ORTHO05D009848 3.9e-53 213.4 254 40.6
AUR62006507 Chenopodium quinoa HOM05D007819 ORTHO05D009848 6.7e-53 212.6 277 40.1
Zm00001eb013150 Zea mays HOM05D007819 ORTHO05D009848 6.7e-53 212.6 284 40.1
FvH4_3g33520 Fragaria vesca HOM05D007819 ORTHO05D009848 1.9e-52 211.1 210 49.0
FAN16G1444 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.5e-52 210.7 324 36.1
Pp3c12_18930 Physcomitrium patens HOM05D000370 ORTHO05D009848 2.8e-51 207.2 287 40.1
Pp3c12_18938 Physcomitrium patens HOM05D000370 ORTHO05D009848 2.8e-51 207.2 287 40.1
Pp3c3_24540 Physcomitrium patens HOM05D007819 ORTHO05D009848 4.8e-51 206.5 291 39.5
Sc21g0003720 Simmondsia chinensis HOM05D007819 ORTHO05D009848 1.4e-50 204.9 210 48.1
Mapoly0088s0067 Marchantia polymorpha HOM05D000370 ORTHO05D001335 3.1e-50 203.8 287 40.1
Lj1A183T52 Lonicera japonica HOM05D007819 ORTHO05D009848 2.0e-49 201.1 251 43.4
Haze_23935 Corylus avellana HOM05D007819 ORTHO05D009848 1.9e-47 194.5 203 47.8
Prupe.6G093600 Prunus persica HOM05D007819 ORTHO05D009848 1.1e-44 185.3 183 49.2
Solyc06g005100.3 Solanum lycopersicum HOM05D007819 ORTHO05D009848 4.1e-42 176.8 197 46.7
Ciclev10029813m.g Citrus clementina HOM05D007819 ORTHO05D009848 2.6e-41 174.1 243 37.9
Peaxi162Scf00389g00619 Petunia axillaris HOM05D007819 ORTHO05D009848 5.9e-41 172.9 244 39.8
Nitab4.5_0001578g0010 Nicotiana tabacum HOM05D007819 ORTHO05D009848 1.0e-40 172.2 230 40.4
Dinv32800 Davidia involucrata HOM05D007819 ORTHO05D009848 1.9e-39 167.9 196 43.9
SGA_v2.0_scaffold2G00920 Striga asiatica HOM05D007819 ORTHO05D009848 8.8e-37 159.1 330 32.7
GSVIVG01025124001 Vitis vinifera HOM05D007819 ORTHO05D009848 2.0e-36 157.9 156 51.3
Nitab4.5_0000022g0250 Nicotiana tabacum HOM05D007819 ORTHO05D009848 2.6e-36 157.5 211 42.2
CAN.G1171.1 Capsicum annuum HOM05D007819 ORTHO05D009848 1.2e-33 148.7 273 36.6
MSTRG.12613 Avicennia marina HOM05D007819 ORTHO05D009848 6.5e-32 142.9 158 45.6
PGSC0003DMG401025397 Solanum tuberosum HOM05D007819 ORTHO05D009848 8.0e-30 136.0 150 47.3
AUR62025022 Chenopodium quinoa HOM05D007819 ORTHO05D009848 2.4e-26 124.4 198 37.4
Migut.O00707 Erythranthe guttata HOM05D007819 ORTHO05D009848 3.5e-25 120.6 133 45.9
MSTRG.12612 Avicennia marina HOM05D007819 ORTHO05D009848 6.8e-21 106.3 99 51.5
SalBow3G4000 Salvia bowleyana HOM05D007819 ORTHO05D009848 1.2e-20 105.5 106 47.2
EL10Ac9g22426 Beta vulgaris HOM05D007819 ORTHO05D009848 1.6e-17 95.1 121 41.3
CSS0001112 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 1.0e-16 92.4 98 49.0
CSS0025937 Camellia sinensis var. sinensis HOM05D007819 ORTHO05D009848 1.0e-16 92.4 98 49.0
QL01p036766 Quercus lobata HOM05D007819 ORTHO05D009848 1.3e-16 92.0 99 42.4
QL01p036758 Quercus lobata HOM05D007819 ORTHO05D009848 1.9e-15 88.2 81 53.1
Oeu012676.1 Olea europaea HOM05D007819 ORTHO05D009848 2.5e-15 87.8 81 48.1
Os03g0287100 Oryza sativa ssp. japonica HOM05D007819 ORTHO05D009848 3.2e-15 87.4 105 41.0
AagrBONN_evm.TU.Sc2ySwM_117.2524 Anthoceros agrestis HOM05D007819 ORTHO05D009848 2.8e-14 84.3 56 64.3
EL10Ac9g22427 Beta vulgaris HOM05D007819 ORTHO05D009848 1.8e-10 71.6 121 35.5
FAN11G3664 Fragaria x ananassa HOM05D007819 ORTHO05D009848 2.1e-06 58.2 67 44.8


User provided reference genes

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