Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_22470 Physcomitrium patens HOM05D004756 ORTHO05D005793 6.0e-58 227.3 111 100.0
Pp3c9_23730 Physcomitrium patens HOM05D004756 ORTHO05D005793 5.3e-22 107.8 107 61.7
Mapoly0069s0027 Marchantia polymorpha HOM05D004756 ORTHO05D005793 2.6e-21 105.5 107 58.9
Mapoly0092s0030 Marchantia polymorpha HOM05D004756 ORTHO05D005793 1.3e-20 103.2 107 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4219 Anthoceros agrestis HOM05D004756 ORTHO05D005793 7.1e-19 97.4 107 52.3
SEGI_24335 Sequoiadendron giganteum HOM05D004756 ORTHO05D005793 1.8e-17 92.8 108 50.9
CBR_g39523 Chara braunii HOM05D004756 ORTHO05D005793 3.0e-17 92.0 107 48.6
FAN13G2410 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.1e-17 91.3 109 53.2
SHI31377 Sapria himalayana HOM05D004756 ORTHO05D005793 6.7e-17 90.9 108 50.0
Zm00001eb205610 Zea mays HOM05D004756 ORTHO05D005793 6.7e-17 90.9 108 50.9
FvH4_6g02380 Fragaria vesca HOM05D004756 ORTHO05D005793 1.5e-16 89.7 108 50.9
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.5e-16 89.7 108 50.9
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.5e-16 89.7 108 50.9
ATR0665G165 Amborella trichopoda HOM05D004756 ORTHO05D005793 1.9e-16 89.4 107 51.4
Atru.chr2.885 Acer truncatum HOM05D004756 ORTHO05D005793 2.5e-16 89.0 108 50.9
Ah.15g093660 Amaranthus hybridus HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
BcaB03g13316 Brassica carinata HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
BcaNung06265 Brassica carinata HOM05D000200 ORTHO05D005793 2.5e-16 89.0 107 50.5
A06p05660 Brassica napus HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
C05p06830 Brassica napus HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
BolC5t29441H Brassica oleracea HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
BraA06t23775Z Brassica rapa HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
CAN.G449.74 Capsicum annuum HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
CAN.G577.1 Capsicum annuum HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
AUR62024000 Chenopodium quinoa HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
Ciclev10020437m.g Citrus clementina HOM05D004756 ORTHO05D005793 2.5e-16 89.0 108 50.0
Ciclev10020741m.g Citrus clementina HOM05D004756 ORTHO05D005793 2.5e-16 89.0 108 50.0
Ciclev10021087m.g Citrus clementina HOM05D004756 ORTHO05D005793 2.5e-16 89.0 108 50.0
Cc05_g09050 Coffea canephora HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 52.3
Duzib128G2034 Durio zibethinus HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
FAN05G2727 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.5e-16 89.0 108 50.0
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.5e-16 89.0 108 50.0
FAN08G1019 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.5e-16 89.0 108 50.0
Gohir.A11G250480 Gossypium hirsutum HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
Gohir.A11G250600 Gossypium hirsutum HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
Gorai.007G279800 Gossypium raimondii HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
Sc21g0004350 Simmondsia chinensis HOM05D004756 ORTHO05D005793 2.5e-16 89.0 107 50.5
Ciclev10021567m.g Citrus clementina HOM05D004756 ORTHO05D005793 3.3e-16 88.6 108 50.0
Prupe.6G347300 Prunus persica HOM05D004756 ORTHO05D005793 3.3e-16 88.6 107 50.5
PGR142G3409 Punica granatum HOM05D004756 ORTHO05D005793 3.3e-16 88.6 107 51.4
GSVIVG01036218001 Vitis vinifera HOM05D004756 ORTHO05D005793 3.3e-16 88.6 108 50.0
AL1G19180 Arabidopsis lyrata HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 49.5
AT1G08750 Arabidopsis thaliana HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 49.5
Carub.0001s0809 Capsella rubella HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 49.5
CDE07G1473 Ceratophyllum demersum HOM05D004756 ORTHO05D005793 4.3e-16 88.2 108 50.9
Thhalv10007907m.g Eutrema salsugineum HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 49.5
FvH4_5g04770 Fragaria vesca HOM05D004756 ORTHO05D005793 4.3e-16 88.2 108 50.0
HanXRQChr01g0015131 Helianthus annuus HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 50.5
Lj7A537T48 Lonicera japonica HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 50.5
Rhsim06G0122800 Rhododendron simsii HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 50.5
RcHm_v2.0_Chr3g0450151 Rosa chinensis HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 50.5
Sp1g07390 Schrenkiella parvula HOM05D004756 ORTHO05D005793 4.3e-16 88.2 107 49.5
Actinidia12823 Actinidia chinensis HOM05D000054 ORTHO05D005793 5.7e-16 87.8 107 50.5
Cfa006386 Carpinus fangiana HOM05D004756 ORTHO05D005793 5.7e-16 87.8 107 50.5
CiPaw.07G070600 Carya illinoinensis HOM05D004756 ORTHO05D005793 5.7e-16 87.8 107 50.5
Dinv06277 Davidia involucrata HOM05D004756 ORTHO05D005793 5.7e-16 87.8 107 50.5
ECA248G2407 Erigeron canadensis HOM05D004756 ORTHO05D005793 5.7e-16 87.8 107 51.4
FAN04G1391 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.7e-16 87.8 108 49.1
FAN18G1570 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.7e-16 87.8 108 49.1
PSO528G0135 Papaver somniferum HOM05D004756 ORTHO05D005793 5.7e-16 87.8 107 50.5
THA.LOC104808029 Tarenaya hassleriana HOM05D004756 ORTHO05D005793 5.7e-16 87.8 107 50.5
TWI56G0480 Tripterygium wilfordii HOM05D004756 ORTHO05D005793 5.7e-16 87.8 108 49.1
Aa31LG8G10570 Aethionema arabicum HOM05D004756 ORTHO05D005793 7.4e-16 87.4 107 49.5
EL10Ac9g21026 Beta vulgaris HOM05D004756 ORTHO05D005793 7.4e-16 87.4 107 50.5
CANSAT54G2478 Cannabis sativa HOM05D004756 ORTHO05D005793 7.4e-16 87.4 107 49.5
COL.COLO4_15415 Corchorus olitorius HOM05D004756 ORTHO05D005793 7.4e-16 87.4 107 50.5
MD04G1227700 Malus domestica HOM05D004756 ORTHO05D005793 7.4e-16 87.4 107 49.5
Os02g0219400 Oryza sativa ssp. japonica HOM05D004756 ORTHO05D005793 7.4e-16 87.4 108 48.1
Solyc10g007850.3 Solanum lycopersicum HOM05D004756 ORTHO05D005793 7.4e-16 87.4 107 49.5
Sopen10g003750 Solanum pennellii HOM05D004756 ORTHO05D005793 7.4e-16 87.4 107 49.5
PGSC0003DMG400021238 Solanum tuberosum HOM05D004756 ORTHO05D005793 7.4e-16 87.4 107 49.5
arahy.Tifrunner.gnm1.ann1.2YXN00 Arachis hypogaea HOM05D004756 ORTHO05D005793 9.7e-16 87.0 107 49.5
arahy.Tifrunner.gnm1.ann1.N732CA Arachis hypogaea HOM05D004756 ORTHO05D005793 9.7e-16 87.0 107 49.5
A09p65770 Brassica napus HOM05D000239 ORTHO05D001037 9.7e-16 87.0 107 49.5
BraA09t41921Z Brassica rapa HOM05D000239 ORTHO05D000484 9.7e-16 87.0 107 49.5
Oeu011324.1 Olea europaea HOM05D004756 ORTHO05D005793 9.7e-16 87.0 107 49.5
SGA_v2.0_scaffold130G34203 Striga asiatica HOM05D004756 ORTHO05D005793 9.7e-16 87.0 107 50.5
CSS0029039 Camellia sinensis var. sinensis HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
CDE06G0731 Ceratophyllum demersum HOM05D004756 ORTHO05D005793 1.3e-15 86.7 108 49.1
Migut.M00214 Erythranthe guttata HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 50.5
FAN02G1286 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.3e-15 86.7 108 49.1
Glyma.04G156000 Glycine max HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
Lsat_1_v5_gn_5_179521 Lactuca sativa HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
Manes.07G069500 Manihot esculenta HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
Nn2g12710 Nelumbo nucifera HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
Phvul.011G079900 Phaseolus vulgaris HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
Potri.019G014000 Populus trichocarpa HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
QL03p029131 Quercus lobata HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 50.5
Sabra19G0016400 Salix brachista HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
Sabra19G0026700 Salix brachista HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
TAR636G3098 Trochodendron aralioides HOM05D004756 ORTHO05D005793 1.3e-15 86.7 107 49.5
CARHR008670 Cardamine hirsuta HOM05D004756 ORTHO05D005793 1.6e-15 86.3 107 48.6
Ca_02704_v3 Cicer arietinum L. HOM05D004756 ORTHO05D005793 1.6e-15 86.3 107 49.5
ClCG06G009440 Citrullus lanatus HOM05D004756 ORTHO05D005793 1.6e-15 86.3 107 50.5
Haze_04391 Corylus avellana HOM05D004756 ORTHO05D005793 1.6e-15 86.3 107 49.5
CsaV3_1G045570 Cucumis sativus L. HOM05D004756 ORTHO05D005793 1.6e-15 86.3 107 50.5
Thecc.05G277000 Theobroma cacao HOM05D004756 ORTHO05D005793 1.6e-15 86.3 107 49.5
HPP92_018816 Vanilla planifolia HOM05D004756 ORTHO05D005793 1.6e-15 86.3 108 48.1
VMungo1127G1235 Vigna mungo HOM05D000724 ORTHO05D000755 1.6e-15 86.3 107 48.6
MSTRG.15061 Avicennia marina HOM05D004756 ORTHO05D005793 2.2e-15 85.9 107 49.5
FAN09G0888 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.2e-15 85.9 103 50.5
Lj7A536T7 Lonicera japonica HOM05D004756 ORTHO05D005793 2.2e-15 85.9 107 49.5
Lj6g0025011 Lotus japonicus HOM05D004756 ORTHO05D005793 2.8e-15 85.5 107 48.6
Glyma.06G217200 Glycine max HOM05D004756 ORTHO05D005793 3.7e-15 85.1 107 49.5
Sed0000709 Sechium edule HOM05D004756 ORTHO05D005793 3.7e-15 85.1 107 49.5
Sed0006035 Sechium edule HOM05D004756 ORTHO05D005793 3.7e-15 85.1 107 49.5
Sed0007432 Sechium edule HOM05D004756 ORTHO05D005793 3.7e-15 85.1 107 49.5
Sed0019802 Sechium edule HOM05D004756 ORTHO05D005793 3.7e-15 85.1 107 49.5
Sed0025298 Sechium edule HOM05D004756 ORTHO05D005793 3.7e-15 85.1 107 49.5
MELO3C024666.2 Cucumis melo HOM05D004756 ORTHO05D005793 4.8e-15 84.7 107 50.5
TPR.G15315 Trifolium pratense HOM05D004756 ORTHO05D005793 6.3e-15 84.3 107 47.7
Eucgr.L01375 Eucalyptus grandis HOM05D004756 ORTHO05D005793 8.2e-15 84.0 107 48.6
Medtr2g058550 Medicago truncatula HOM05D004756 ORTHO05D005793 1.1e-14 83.6 107 47.7
PSO170G6485 Papaver somniferum HOM05D004756 ORTHO05D005793 1.1e-14 83.6 107 49.5
SMO356G0549 Selaginella moellendorffii HOM05D004756 ORTHO05D005793 1.1e-14 83.6 107 46.7
Psat0s4043g0080 Pisum sativum HOM05D004756 ORTHO05D005793 1.8e-14 82.8 107 47.7
Eucgr.H00259 Eucalyptus grandis HOM05D004756 ORTHO05D005793 2.4e-14 82.4 107 48.6
Lalb_Chr08g0234301 Lupinus albus HOM05D004756 ORTHO05D005793 2.4e-14 82.4 107 49.5
unitig_62.g23111 Utricularia gibba HOM05D004756 ORTHO05D005793 6.9e-14 80.9 107 47.7
Glyma.20G034600 Glycine max HOM05D004756 ORTHO05D005793 1.5e-13 79.7 107 46.7
Cfa024521 Carpinus fangiana HOM05D004756 ORTHO05D005793 7.6e-13 77.4 110 40.9
vmacro12429 Vaccinium macrocarpon HOM05D004756 ORTHO05D005793 1.3e-12 76.6 156 39.1
Nitab4.5_0002027g0100 Nicotiana tabacum HOM05D004756 ORTHO05D005793 4.2e-11 71.6 90 48.9
PGSC0003DMG400011666 Solanum tuberosum HOM05D004756 ORTHO05D005793 5.5e-11 71.2 90 48.9
DCAR_010735 Daucus carota HOM05D004756 ORTHO05D005793 9.4e-11 70.5 97 47.4
Actinidia11184 Actinidia chinensis HOM05D004756 ORTHO05D005793 1.6e-10 69.7 121 40.5
Lsat_1_v5_gn_8_53341 Lactuca sativa HOM05D004756 ORTHO05D005793 2.1e-10 69.3 105 41.0
Aqoxy2G03592 Aquilegia oxysepala HOM05D004756 ORTHO05D005793 2.7e-10 68.9 95 44.2
MCO16G186 Micromonas commoda HOM05D004756 ORTHO05D005793 2.7e-10 68.9 105 40.0
Lsat_1_v5_gn_2_109700 Lactuca sativa HOM05D004756 ORTHO05D005793 6.1e-10 67.8 128 38.3
Hund00823 Selenicereus undatus HOM05D004756 ORTHO05D005793 5.1e-09 64.7 72 51.4
Ciclev10024315m.g Citrus clementina HOM05D004756 ORTHO05D005793 8.8e-09 63.9 72 51.4
Haze_27491 Corylus avellana HOM05D004756 ORTHO05D005793 8.8e-09 63.9 108 38.0
Cre03.g153800 Chlamydomonas reinhardtii HOM05D004756 ORTHO05D005793 1.1e-06 57.0 107 36.4
Medtr1g085630 Medicago truncatula HOM05D004756 ORTHO05D005793 1.4e-06 56.6 85 42.4
Cpa.g.sc172.16 Carica papaya HOM05D004756 ORTHO05D005793 2.4e-06 55.8 54 57.4
Nitab4.5_0001402g0150 Nicotiana tabacum HOM05D004756 ORTHO05D005793 2.4e-06 55.8 54 57.4
C08p49840 Brassica napus HOM05D000239 ORTHO05D000484 5.3e-06 54.7 65 49.2


User provided reference genes

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