Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 2.2e-166 589.0 317 100.0
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 6.0e-111 404.8 327 71.6
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 2.7e-47 193.4 281 44.1
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.1e-35 154.8 262 42.4
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.7e-33 147.5 223 40.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.5e-33 145.6 342 37.1
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 4.2e-32 142.9 226 44.2
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 4.2e-32 142.9 285 37.2
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 4.2e-32 142.9 283 36.4
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 7.2e-32 142.1 280 36.4
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 7.2e-32 142.1 280 36.4
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 9.4e-32 141.7 243 39.5
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 9.4e-32 141.7 217 43.3
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 9.4e-32 141.7 336 35.4
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.1e-31 140.6 253 37.9
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.1e-31 140.6 229 39.3
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 2.7e-31 140.2 227 40.1
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 4.7e-31 139.4 317 36.3
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 4.7e-31 139.4 308 35.7
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 4.7e-31 139.4 292 36.3
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 8.0e-31 138.7 337 35.3
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.4e-30 137.9 258 38.0
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-30 137.9 337 35.3
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.8e-30 137.5 309 34.0
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.8e-30 137.5 309 34.0
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.8e-30 137.5 284 34.2
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.8e-30 137.5 306 35.0
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 4.0e-30 136.3 261 36.4
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 6.8e-30 135.6 284 34.2
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.8e-30 135.6 230 42.2
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.8e-30 135.2 302 35.4
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 8.8e-30 135.2 264 37.9
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 8.8e-30 135.2 264 37.1
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 8.8e-30 135.2 261 36.4
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.2e-29 134.8 229 36.7
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.2e-29 134.8 306 33.3
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 2.0e-29 134.0 228 39.0
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 2.0e-29 134.0 299 33.1
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.6e-29 133.7 312 34.0
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 3.4e-29 133.3 274 35.8
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.4e-29 132.9 333 34.8
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 4.4e-29 132.9 223 40.8
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.7e-29 132.5 249 39.4
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 5.7e-29 132.5 296 37.2
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 7.5e-29 132.1 219 42.5
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 9.8e-29 131.7 311 35.0
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 9.8e-29 131.7 307 32.6
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 1.3e-28 131.3 220 40.9
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.3e-28 131.3 305 31.8
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.7e-28 131.0 229 39.3
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.7e-28 131.0 278 36.7
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.2e-28 130.6 223 40.8
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.2e-28 130.6 221 40.3
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.8e-28 130.2 226 42.5
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 6.3e-28 129.0 176 42.0
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 6.3e-28 129.0 198 42.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 6.3e-28 129.0 246 39.8
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 6.3e-28 129.0 218 40.8
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 6.3e-28 129.0 303 35.0
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 8.3e-28 128.6 323 33.1
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 8.3e-28 128.6 269 35.7
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 8.3e-28 128.6 292 35.6
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 8.3e-28 128.6 221 39.8
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.1e-27 128.3 307 34.5
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.1e-27 128.3 224 41.5
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.4e-27 127.9 222 40.5
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.8e-27 127.5 274 35.0
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 3.1e-27 126.7 222 38.3
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.1e-27 126.7 233 40.8
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.1e-27 126.3 229 38.0
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 7.0e-27 125.6 250 39.6
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 7.0e-27 125.6 221 41.6
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 7.0e-27 125.6 298 32.6
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 9.1e-27 125.2 231 37.2
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 9.1e-27 125.2 278 36.7
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 9.1e-27 125.2 284 35.9
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.2e-26 124.8 295 32.9
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.2e-26 124.8 248 38.3
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.6e-26 124.4 171 45.0
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.6e-26 124.4 302 34.4
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.0e-26 124.0 228 39.9
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 2.0e-26 124.0 253 37.2
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.7e-26 123.6 217 41.0
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.7e-26 123.6 248 38.7
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 2.7e-26 123.6 265 37.4
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 3.5e-26 123.2 302 33.1
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.5e-26 123.2 314 33.8
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 4.5e-26 122.9 220 38.6
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.5e-26 122.9 152 48.0
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 4.5e-26 122.9 327 31.2
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.9e-26 122.5 314 33.8
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.9e-26 122.5 231 40.7
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.9e-26 122.5 230 39.6
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 7.7e-26 122.1 251 39.4
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.0e-25 121.7 146 47.3
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.0e-25 121.7 289 33.9
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.0e-25 121.7 260 36.5
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.3e-25 121.3 146 45.2
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.7e-25 120.9 209 39.7
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.7e-25 120.9 252 38.5
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 3.8e-25 119.8 167 43.7
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 3.8e-25 119.8 219 38.8
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 3.8e-25 119.8 252 35.7
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 6.5e-25 119.0 190 40.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 8.6e-25 118.6 243 38.3
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 8.6e-25 118.6 265 35.8
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 8.6e-25 118.6 231 39.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.1e-24 118.2 140 47.1
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.5e-24 117.9 149 45.0
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.5e-24 117.9 225 41.3
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.9e-24 117.5 149 47.0
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 2.5e-24 117.1 309 34.0
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.5e-24 117.1 224 39.3
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 3.2e-24 116.7 232 39.7
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.2e-24 116.7 296 33.4
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 4.2e-24 116.3 220 40.5
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 4.2e-24 116.3 255 33.7
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 4.2e-24 116.3 264 36.4
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.5e-24 115.9 284 35.2
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 5.5e-24 115.9 244 38.1
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 5.5e-24 115.9 260 34.2
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 7.2e-24 115.5 242 38.0
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 9.5e-24 115.2 148 48.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.6e-23 114.4 236 37.7
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.6e-23 114.4 148 45.9
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.1e-23 114.0 233 38.2
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 2.1e-23 114.0 150 46.0
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 2.8e-23 113.6 233 36.5
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 3.6e-23 113.2 223 39.0
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.0e-22 111.7 285 34.0
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 3.0e-22 110.2 302 31.5
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 5.2e-22 109.4 295 32.5
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 8.8e-22 108.6 223 38.1
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 8.8e-22 108.6 229 37.6
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.6e-21 107.1 233 37.3
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 2.6e-21 107.1 224 37.5
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 3.4e-21 106.7 131 48.1
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 5.7e-21 105.9 177 37.3
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 3.7e-20 103.2 130 46.2
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 4.9e-20 102.8 226 35.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.1e-19 101.7 164 40.9
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-19 101.7 211 37.0
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.8e-19 100.9 219 35.6
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 9.2e-19 98.6 249 30.9
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 1.6e-18 97.8 130 45.4
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.6e-18 97.8 219 32.4
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 7.8e-18 95.5 225 35.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 9.5e-16 88.6 130 40.0
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.1e-15 87.4 180 34.4
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 2.1e-15 87.4 182 35.2
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 6.1e-15 85.9 75 58.7
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 8.0e-15 85.5 226 32.3
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 4.0e-14 83.2 145 37.9
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.2e-14 82.8 214 31.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.2e-14 82.8 214 31.3
Pp3c12_12360 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.2e-13 81.6 93 53.8
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 9.8e-13 78.6 122 41.8
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 4.9e-12 76.3 187 36.4
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 2.0e-10 70.9 64 56.2
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.7e-10 70.5 58 62.1
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.0e-09 68.6 101 44.6
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 3.9e-09 66.6 68 51.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 6.6e-09 65.9 214 30.4
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 2.8e-07 60.5 64 51.6


User provided reference genes

Program Settings