Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_21390 Physcomitrium patens HOM05D007483 ORTHO05D009133 7.3e-130 467.2 236 100.0
Lsat_1_v5_gn_9_30381 Lactuca sativa HOM05D007483 ORTHO05D009133 2.4e-32 143.3 82 74.4
MSTRG.19078 Avicennia marina HOM05D007483 ORTHO05D009133 7.0e-32 141.7 98 69.4
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 9.2e-32 141.4 88 69.3
Aqoxy1G00916 Aquilegia oxysepala HOM05D007483 ORTHO05D009133 1.2e-31 141.0 84 70.2
CAN.G324.11 Capsicum annuum HOM05D007483 ORTHO05D009133 1.2e-31 141.0 97 67.0
ClCG04G008120 Citrullus lanatus HOM05D007483 ORTHO05D009133 1.2e-31 141.0 150 50.7
Dinv35587 Davidia involucrata HOM05D007483 ORTHO05D009133 1.2e-31 141.0 82 74.4
Eucgr.A01276 Eucalyptus grandis HOM05D007483 ORTHO05D009133 1.2e-31 141.0 92 67.4
Sopen10g034250 Solanum pennellii HOM05D007483 ORTHO05D009133 1.6e-31 140.6 97 67.0
Sed0013393 Sechium edule HOM05D007483 ORTHO05D009133 2.0e-31 140.2 104 62.5
SEGI_13406 Sequoiadendron giganteum HOM05D007483 ORTHO05D009133 2.0e-31 140.2 102 64.7
CARHR083670 Cardamine hirsuta HOM05D007483 ORTHO05D009133 2.7e-31 139.8 91 70.3
PSO063G2390 Papaver somniferum HOM05D007483 ORTHO05D009133 2.7e-31 139.8 95 69.5
Sabra16G0100900 Salix brachista HOM05D007483 ORTHO05D009133 2.7e-31 139.8 127 54.3
Duzib093G2195 Durio zibethinus HOM05D007483 ORTHO05D009133 3.5e-31 139.4 105 62.9
Gohir.D12G223900 Gossypium hirsutum HOM05D007483 ORTHO05D009133 3.5e-31 139.4 85 68.2
Manes.08G088800 Manihot esculenta HOM05D007483 ORTHO05D009133 3.5e-31 139.4 93 69.9
Thecc.05G037700 Theobroma cacao HOM05D007483 ORTHO05D009133 3.5e-31 139.4 96 66.7
Aa31LG3G1800 Aethionema arabicum HOM05D007483 ORTHO05D009133 5.9e-31 138.7 103 61.2
HanXRQChr16g0497811 Helianthus annuus HOM05D007483 ORTHO05D009133 5.9e-31 138.7 100 62.0
RcHm_v2.0_Chr3g0466381 Rosa chinensis HOM05D007483 ORTHO05D009133 5.9e-31 138.7 94 62.8
Nitab4.5_0000216g0380 Nicotiana tabacum HOM05D007483 ORTHO05D009133 7.8e-31 138.3 87 67.8
ECA247G0729 Erigeron canadensis HOM05D001424 ORTHO05D009133 1.0e-30 137.9 82 69.5
EL10Ac6g14169 Beta vulgaris HOM05D007483 ORTHO05D009133 1.3e-30 137.5 151 49.0
Actinidia13151 Actinidia chinensis HOM05D007483 ORTHO05D009133 1.7e-30 137.1 88 67.0
A05p39660 Brassica napus HOM05D007483 ORTHO05D009133 1.7e-30 137.1 127 55.9
BraA05t22748Z Brassica rapa HOM05D007483 ORTHO05D009133 1.7e-30 137.1 127 55.9
Migut.J00322 Erythranthe guttata HOM05D007483 ORTHO05D009133 1.7e-30 137.1 94 63.8
Gohir.A12G221500 Gossypium hirsutum HOM05D007483 ORTHO05D009133 1.7e-30 137.1 97 60.8
GSVIVG01034153001 Vitis vinifera HOM05D007483 ORTHO05D009133 1.7e-30 137.1 103 60.2
CiPaw.09G194400 Carya illinoinensis HOM05D007483 ORTHO05D009133 3.0e-30 136.3 108 58.3
Thhalv10021669m.g Eutrema salsugineum HOM05D007483 ORTHO05D009133 3.0e-30 136.3 91 68.1
FAN09G2152 Fragaria x ananassa HOM05D007483 ORTHO05D009133 3.0e-30 136.3 98 62.2
QL07p048670 Quercus lobata HOM05D007483 ORTHO05D009133 3.0e-30 136.3 97 62.9
C05p58700 Brassica napus HOM05D007483 ORTHO05D009133 3.9e-30 136.0 91 68.1
BolC5t34519H Brassica oleracea HOM05D007483 ORTHO05D009133 3.9e-30 136.0 91 68.1
FAN14G1457 Fragaria x ananassa HOM05D007483 ORTHO05D009133 3.9e-30 136.0 95 65.3
Oeu007795.1 Olea europaea HOM05D007483 ORTHO05D009133 3.9e-30 136.0 70 82.9
THA.LOC104816252 Tarenaya hassleriana HOM05D007483 ORTHO05D009133 5.0e-30 135.6 95 65.3
VMungo0331G1516 Vigna mungo HOM05D007483 ORTHO05D009133 5.0e-30 135.6 97 62.9
Ah.06g191870 Amaranthus hybridus HOM05D007483 ORTHO05D009133 6.6e-30 135.2 89 66.3
AT3G09310 Arabidopsis thaliana HOM05D007483 ORTHO05D009133 6.6e-30 135.2 118 56.8
Os11g0706100 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 6.6e-30 135.2 86 67.4
Sp3g07690 Schrenkiella parvula HOM05D007483 ORTHO05D009133 8.6e-30 134.8 100 64.0
AUR62025813 Chenopodium quinoa HOM05D007483 ORTHO05D009133 1.1e-29 134.4 82 73.2
Solyc10g084810.3 Solanum lycopersicum HOM05D007483 ORTHO05D009133 1.1e-29 134.4 70 80.0
AL3G20460 Arabidopsis lyrata HOM05D007483 ORTHO05D009133 1.5e-29 134.0 118 55.1
Carub.0003s0842 Capsella rubella HOM05D007483 ORTHO05D009133 1.5e-29 134.0 107 58.9
FAN02G3616 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.5e-29 134.0 98 62.2
Potri.016G099700 Populus trichocarpa HOM05D007483 ORTHO05D009133 1.5e-29 134.0 113 56.6
PSO339G1657 Papaver somniferum HOM05D007483 ORTHO05D009133 1.9e-29 133.7 99 65.7
SGA_v2.0_scaffold126G33776 Striga asiatica HOM05D007483 ORTHO05D009133 2.5e-29 133.3 97 63.9
Zm00001eb164460 Zea mays HOM05D007483 ORTHO05D009133 2.5e-29 133.3 84 67.9
BcaC05g29522 Brassica carinata HOM05D007483 ORTHO05D009133 3.3e-29 132.9 138 50.0
Mapoly0019s0017 Marchantia polymorpha HOM05D007483 ORTHO05D009133 3.3e-29 132.9 113 53.1
Phvul.010G011100 Phaseolus vulgaris HOM05D007483 ORTHO05D009133 3.3e-29 132.9 99 61.6
Cc06_g02530 Coffea canephora HOM05D007483 ORTHO05D009133 4.3e-29 132.5 84 67.9
Cfa016672 Carpinus fangiana HOM05D007483 ORTHO05D009133 5.6e-29 132.1 90 63.3
FAN05G4215 Fragaria x ananassa HOM05D007483 ORTHO05D009133 5.6e-29 132.1 98 61.2
Ca_05061_v3 Cicer arietinum L. HOM05D007483 ORTHO05D009133 7.3e-29 131.7 93 63.4
MD12G1143600 Malus domestica HOM05D007483 ORTHO05D009133 7.3e-29 131.7 112 55.4
TWI74G0092 Tripterygium wilfordii HOM05D007483 ORTHO05D009133 7.3e-29 131.7 109 57.8
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05D007483 ORTHO05D009133 9.5e-29 131.3 112 56.2
Lj3g0014039 Lotus japonicus HOM05D007483 ORTHO05D009133 1.2e-28 131.0 103 54.4
arahy.Tifrunner.gnm1.ann1.29J2UD Arachis hypogaea HOM05D007483 ORTHO05D009133 1.6e-28 130.6 107 56.1
DCAR_028750 Daucus carota HOM05D007483 ORTHO05D009133 1.6e-28 130.6 70 78.6
Medtr4g021820 Medicago truncatula HOM05D007483 ORTHO05D009133 1.6e-28 130.6 94 60.6
Glyma.03G066000 Glycine max HOM05D007483 ORTHO05D009133 2.1e-28 130.2 98 58.2
arahy.Tifrunner.gnm1.ann1.A9IP9X Arachis hypogaea HOM05D007483 ORTHO05D009133 3.6e-28 129.4 107 56.1
Hund10634 Selenicereus undatus HOM05D007483 ORTHO05D009133 4.7e-28 129.0 95 65.3
BcaC05g29659 Brassica carinata HOM05D007483 ORTHO05D009133 6.2e-28 128.6 129 50.4
Lalb_Chr07g0193781 Lupinus albus HOM05D007483 ORTHO05D009133 6.2e-28 128.6 105 57.1
Cfa017361 Carpinus fangiana HOM05D007483 ORTHO05D009133 1.0e-27 127.9 90 62.2
CANSAT11G2488 Cannabis sativa HOM05D007483 ORTHO05D009133 2.3e-27 126.7 100 60.0
Prupe.6G257100 Prunus persica HOM05D007483 ORTHO05D009133 5.2e-27 125.6 95 60.0
HPP92_019244 Vanilla planifolia HOM05D007483 ORTHO05D009133 6.8e-27 125.2 129 48.8
TPR.G7337 Trifolium pratense HOM05D007483 ORTHO05D009133 1.5e-26 124.0 140 49.3
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 3.4e-26 122.9 172 43.6
CBR_g19672 Chara braunii HOM05D007483 ORTHO05D009133 5.8e-26 122.1 87 58.6
Os02g0260400 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 1.9e-24 117.1 63 77.8
CsaV3_4G025070 Cucumis sativus L. HOM05D007483 ORTHO05D009133 5.4e-24 115.5 134 47.0
MELO3C033192.2 Cucumis melo HOM05D007483 ORTHO05D009133 1.6e-23 114.0 69 72.5
FvH4_6g13510 Fragaria vesca HOM05D007483 ORTHO05D009133 2.0e-23 113.6 63 71.4
Rhsim04G0158000 Rhododendron simsii HOM05D007483 ORTHO05D009133 7.8e-23 111.7 75 62.7
Cpa.g.sc169.23 Carica papaya HOM05D007483 ORTHO05D009133 1.0e-22 111.3 85 56.5
SMO165G0096 Selaginella moellendorffii HOM05D007483 ORTHO05D009133 1.0e-22 111.3 65 75.4
TAR636G3143 Trochodendron aralioides HOM05D007483 ORTHO05D009133 1.7e-22 110.5 78 61.5
MBI05_g28376_MAGBIO Magnolia biondii HOM05D007483 ORTHO05D009133 3.0e-22 109.8 68 70.6
Sabra13G0104100 Salix brachista HOM05D007483 ORTHO05D009133 3.9e-22 109.4 105 52.4
Cre17.g720183 Chlamydomonas reinhardtii HOM05D007483 ORTHO05D009133 8.6e-22 108.2 72 56.9
PGSC0003DMG400011065 Solanum tuberosum HOM05D007483 ORTHO05D009133 1.5e-21 107.5 81 63.0
Nitab4.5_0000202g0060 Nicotiana tabacum HOM05D007483 ORTHO05D009133 1.9e-21 107.1 70 65.7
ATR0559G251 Amborella trichopoda HOM05D007483 ORTHO05D009133 5.6e-21 105.5 93 52.7
Lj2A93G81 Lonicera japonica HOM05D007483 ORTHO05D009133 1.6e-20 104.0 78 62.8
Peaxi162Scf00094g01112 Petunia axillaris HOM05D007483 ORTHO05D009133 3.1e-19 99.8 72 62.5
MCO07G608 Micromonas commoda HOM05D007483 ORTHO05D009133 3.7e-17 92.8 64 53.1
Ciclev10012381m.g Citrus clementina HOM05D007483 ORTHO05D009133 1.9e-16 90.5 60 66.7
PRCOL_00002574 Prasinoderma coloniale HOM05D007483 ORTHO05D009133 2.7e-15 86.7 76 53.9
Psat2g094360 Pisum sativum HOM05D007483 ORTHO05D009133 3.7e-09 66.2 76 46.1


User provided reference genes

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