Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 2.2e-216 755.4 385 100.0
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 7.3e-95 351.7 383 47.5
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 8.1e-78 295.0 383 40.7
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 1.4e-74 284.3 378 40.2
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 7.1e-74 282.0 377 40.6
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 2.1e-73 280.4 376 39.9
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 1.3e-72 277.7 383 39.2
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.3e-72 276.9 376 41.2
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 3.9e-72 276.2 380 38.2
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.1e-71 274.6 373 39.4
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 2.5e-71 273.5 382 39.0
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 3.3e-71 273.1 380 39.7
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 9.6e-71 271.6 370 38.1
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.3e-70 271.2 375 40.5
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 2.1e-70 270.4 365 40.0
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 4.8e-70 269.2 381 38.8
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 6.2e-70 268.9 368 40.2
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 6.2e-70 268.9 374 39.6
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 8.1e-70 268.5 369 39.3
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 1.4e-69 267.7 372 39.0
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 1.4e-69 267.7 374 37.4
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 1.8e-69 267.3 368 40.8
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.8e-69 267.3 380 40.0
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 1.8e-69 267.3 374 36.6
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 2.4e-69 266.9 389 37.8
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 2.4e-69 266.9 369 39.0
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 2.4e-69 266.9 369 38.8
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 2.4e-69 266.9 369 39.0
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 2.4e-69 266.9 380 37.6
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 3.1e-69 266.5 383 38.6
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 3.1e-69 266.5 368 39.4
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 4.0e-69 266.2 368 40.5
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 4.0e-69 266.2 371 38.5
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 4.0e-69 266.2 368 40.2
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 6.9e-69 265.4 369 38.8
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 9.0e-69 265.0 368 39.9
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 1.2e-68 264.6 368 39.1
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.2e-68 264.6 368 39.9
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 2.6e-68 263.5 369 38.8
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 2.6e-68 263.5 368 40.2
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 3.4e-68 263.1 382 38.0
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 3.4e-68 263.1 368 38.0
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 4.5e-68 262.7 372 38.4
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 4.5e-68 262.7 383 38.6
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 4.5e-68 262.7 369 38.8
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 5.8e-68 262.3 380 38.2
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 7.6e-68 261.9 368 38.0
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 7.6e-68 261.9 379 37.5
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 7.6e-68 261.9 368 38.0
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 9.9e-68 261.5 368 39.9
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 9.9e-68 261.5 372 38.4
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.3e-67 261.2 378 37.3
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 2.2e-67 260.4 368 38.9
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 2.2e-67 260.4 367 40.3
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 4.9e-67 259.2 369 38.5
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 4.9e-67 259.2 381 38.1
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 4.9e-67 259.2 378 36.8
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.1e-66 258.1 378 36.2
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.1e-66 258.1 365 39.7
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.4e-66 257.7 374 37.7
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 2.4e-66 256.9 376 38.0
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 2.4e-66 256.9 362 39.0
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.2e-66 256.5 387 37.0
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 3.2e-66 256.5 361 39.6
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 3.2e-66 256.5 368 38.3
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 4.2e-66 256.1 376 36.2
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 5.4e-66 255.8 376 37.2
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 7.1e-66 255.4 368 37.5
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 9.3e-66 255.0 369 37.7
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 9.3e-66 255.0 368 37.2
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 9.3e-66 255.0 368 37.2
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 1.6e-65 254.2 380 36.6
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.1e-65 253.8 368 37.2
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 2.1e-65 253.8 368 38.9
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 2.7e-65 253.4 378 37.3
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 3.5e-65 253.1 368 38.3
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 3.5e-65 253.1 368 38.6
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.9e-65 251.9 368 37.0
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 7.9e-65 251.9 351 39.0
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.0e-64 251.5 368 37.8
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 1.0e-64 251.5 374 37.7
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 1.3e-64 251.1 368 39.1
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 1.8e-64 250.8 388 36.3
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 2.3e-64 250.4 368 37.5
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 2.3e-64 250.4 386 35.0
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.5e-63 246.9 375 38.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 4.3e-63 246.1 368 37.0
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 4.3e-63 246.1 368 37.5
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 4.3e-63 246.1 353 39.1
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.6e-62 244.2 421 34.9
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.1e-61 241.5 368 36.1
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 4.5e-60 236.1 391 34.5
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 3.2e-58 229.9 416 33.4
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.6e-54 217.6 368 35.1
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 4.0e-53 213.0 314 38.5
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 5.8e-52 209.1 351 36.2
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 5.7e-47 192.6 258 40.3
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 6.9e-45 185.7 279 36.6
Pp3c18_6530 Physcomitrium patens HOM05D005972 ORTHO05D007548 5.5e-42 176.0 105 87.6
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.1e-41 174.1 246 38.6
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.3e-40 170.6 188 41.5
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 8.2e-38 162.2 268 34.0
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 1.1e-31 141.7 404 27.2
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 5.5e-26 122.9 345 28.4
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.8e-24 117.9 157 41.4
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 3.0e-24 117.1 138 43.5
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 3.0e-24 117.1 121 47.9
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 9.7e-23 112.1 112 46.4
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.7e-22 111.3 139 43.9
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 4.8e-22 109.8 167 37.1
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 4.8e-22 109.8 167 37.1
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.0e-20 104.4 113 44.2
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 9.4e-18 95.5 170 33.5
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 2.8e-14 84.0 153 34.6
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 5.9e-12 76.3 100 45.0
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 1.6e-09 68.2 145 33.1
Rhsim12G0198700 Rhododendron simsii HOM05D001142 ORTHO05D004628 6.1e-09 66.2 346 22.5
PRCOL_00002557 Prasinoderma coloniale HOM05D001203 ORTHO05D021247 5.2e-08 63.2 302 28.1
vmacro16956 Vaccinium macrocarpon HOM05D001142 ORTHO05D004628 6.8e-08 62.8 345 22.9
Hma1.2p1_0841F.1_g226960 Hydrangea macrophylla HOM05D000883 ORTHO05D002942 1.5e-07 61.6 365 23.3
CSS0029517 Camellia sinensis var. sinensis HOM05D001142 ORTHO05D004628 3.4e-07 60.5 344 23.3
VMungo1080G1378 Vigna mungo HOM05D001142 ORTHO05D004628 3.4e-07 60.5 341 21.7
arahy.Tifrunner.gnm1.ann1.5D55UE Arachis hypogaea HOM05D001142 ORTHO05D004628 5.7e-07 59.7 343 21.9
arahy.Tifrunner.gnm1.ann1.5G9G3T Arachis hypogaea HOM05D001142 ORTHO05D004628 5.7e-07 59.7 343 21.9
Phvul.005G167800 Phaseolus vulgaris HOM05D001142 ORTHO05D004628 2.2e-06 57.8 343 22.2
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 2.2e-06 57.8 70 47.1
QL01p026452 Quercus lobata HOM05D000883 ORTHO05D002942 2.8e-06 57.4 135 28.9
CSS0023163 Camellia sinensis var. sinensis HOM05D001142 ORTHO05D004628 3.7e-06 57.0 344 23.0
Actinidia24751 Actinidia chinensis HOM05D001142 ORTHO05D004628 4.8e-06 56.6 341 23.2
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 4.8e-06 56.6 99 36.4
Cfa004576 Carpinus fangiana HOM05D000883 ORTHO05D002942 6.3e-06 56.2 135 29.6
Haze_10169 Corylus avellana HOM05D000883 ORTHO05D002942 6.3e-06 56.2 135 29.6
FvH4_6g10760 Fragaria vesca HOM05D000883 ORTHO05D002942 8.3e-06 55.8 143 30.8
FAN05G4157 Fragaria x ananassa HOM05D000883 ORTHO05D002942 8.3e-06 55.8 143 31.5
FAN05G4725 Fragaria x ananassa HOM05D000883 ORTHO05D002942 8.3e-06 55.8 143 30.8
FAN14G2348 Fragaria x ananassa HOM05D000883 ORTHO05D002942 8.3e-06 55.8 143 30.8


User provided reference genes

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