Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_18640 Physcomitrium patens HOM05D006520 ORTHO05D008405 9.2e-193 676.8 360 100.0
Mapoly0055s0094 Marchantia polymorpha HOM05D006520 ORTHO05D008405 5.5e-121 438.3 339 67.0
Aqoxy5G00708 Aquilegia oxysepala HOM05D006520 ORTHO05D008405 1.0e-114 417.5 331 63.4
Thhalv10011599m.g Eutrema salsugineum HOM05D006520 ORTHO05D008405 2.9e-114 416.0 331 61.9
AL1G58660 Arabidopsis lyrata HOM05D006520 ORTHO05D008405 9.5e-113 411.0 342 58.8
ATR0706G183 Amborella trichopoda HOM05D006520 ORTHO05D008405 1.2e-112 410.6 331 62.8
BcaC01g01246 Brassica carinata HOM05D006520 ORTHO05D008405 1.2e-112 410.6 329 60.8
BolC3t21294H Brassica oleracea HOM05D006520 ORTHO05D008405 1.2e-112 410.6 329 60.8
BraA08t32341Z Brassica rapa HOM05D006520 ORTHO05D008405 1.2e-112 410.6 329 60.8
AT1G50940 Arabidopsis thaliana HOM05D006520 ORTHO05D008405 1.6e-112 410.2 358 57.0
A08p03100 Brassica napus HOM05D006520 ORTHO05D008405 1.6e-112 410.2 329 60.8
C03p89710 Brassica napus HOM05D006520 ORTHO05D008405 2.8e-112 409.5 355 58.3
THA.LOC104817880 Tarenaya hassleriana HOM05D006520 ORTHO05D008405 4.7e-112 408.7 331 61.6
PGR083G2407 Punica granatum HOM05D006520 ORTHO05D008405 1.4e-111 407.1 330 62.7
Sc16g0006360 Simmondsia chinensis HOM05D006520 ORTHO05D008405 1.4e-111 407.1 329 61.7
Aa31LG10G3340 Aethionema arabicum HOM05D006520 ORTHO05D008405 1.8e-111 406.8 360 57.5
BcaB04g17242 Brassica carinata HOM05D006520 ORTHO05D008405 1.8e-111 406.8 349 58.7
Carub.0001s3988 Capsella rubella HOM05D006520 ORTHO05D008405 2.3e-111 406.4 342 58.2
CANSAT35G1182 Cannabis sativa HOM05D006520 ORTHO05D008405 3.0e-111 406.0 358 58.9
Potri.011G135600 Populus trichocarpa HOM05D006520 ORTHO05D008405 3.0e-111 406.0 329 61.1
Atru.chr2.3238 Acer truncatum HOM05D006520 ORTHO05D008405 6.8e-111 404.8 358 58.9
Nn3g21422 Nelumbo nucifera HOM05D006520 ORTHO05D008405 1.2e-110 404.1 331 61.9
Sp1g37680 Schrenkiella parvula HOM05D006520 ORTHO05D008405 2.0e-110 403.3 358 58.1
DCAR_010030 Daucus carota HOM05D006520 ORTHO05D008405 3.4e-110 402.5 331 61.6
CARHR040980 Cardamine hirsuta HOM05D006520 ORTHO05D008405 9.8e-110 401.0 359 56.3
Hund18268 Selenicereus undatus HOM05D006520 ORTHO05D008405 9.8e-110 401.0 329 61.4
CiPaw.11G185500 Carya illinoinensis HOM05D006520 ORTHO05D008405 1.7e-109 400.2 344 58.7
Eucgr.F00972 Eucalyptus grandis HOM05D006520 ORTHO05D008405 2.2e-109 399.8 330 61.8
Glyma.06G270300 Glycine max HOM05D006520 ORTHO05D008405 6.3e-109 398.3 332 63.3
Duzib213G0852 Durio zibethinus HOM05D006520 ORTHO05D008405 1.4e-108 397.1 331 61.3
Solyc12g005200.3 Solanum lycopersicum HOM05D006520 ORTHO05D008405 1.4e-108 397.1 342 59.1
AUR62043225 Chenopodium quinoa HOM05D006520 ORTHO05D008405 1.8e-108 396.7 330 59.7
COL.COLO4_09604 Corchorus olitorius HOM05D006520 ORTHO05D008405 2.4e-108 396.4 331 61.6
MD03G1209400 Malus domestica HOM05D006520 ORTHO05D008405 2.4e-108 396.4 361 57.6
Sed0027741 Sechium edule HOM05D006520 ORTHO05D008405 3.2e-108 396.0 331 61.0
Sopen12g001190 Solanum pennellii HOM05D006520 ORTHO05D008405 3.2e-108 396.0 349 59.0
PGSC0003DMG400001100 Solanum tuberosum HOM05D006520 ORTHO05D008405 5.4e-108 395.2 349 58.5
TAR362G1255 Trochodendron aralioides HOM05D006520 ORTHO05D008405 5.4e-108 395.2 356 58.7
vmacro11755 Vaccinium macrocarpon HOM05D006520 ORTHO05D008405 5.4e-108 395.2 352 58.8
AUR62020529 Chenopodium quinoa HOM05D006520 ORTHO05D008405 7.0e-108 394.8 330 59.4
Cfa020400 Carpinus fangiana HOM05D006520 ORTHO05D008405 9.2e-108 394.4 352 57.7
Lsat_1_v5_gn_7_65980 Lactuca sativa HOM05D006520 ORTHO05D008405 9.2e-108 394.4 337 60.2
Nitab4.5_0000653g0110 Nicotiana tabacum HOM05D006520 ORTHO05D008405 9.2e-108 394.4 354 56.5
CAN.G315.8 Capsicum annuum HOM05D006520 ORTHO05D008405 1.2e-107 394.0 335 59.4
QL08p012619 Quercus lobata HOM05D006520 ORTHO05D008405 1.2e-107 394.0 330 59.7
Ah.06g182970 Amaranthus hybridus HOM05D006520 ORTHO05D008405 1.6e-107 393.7 329 58.4
Lalb_Chr03g0030081 Lupinus albus HOM05D006520 ORTHO05D008405 1.6e-107 393.7 346 60.7
Cpa.g.sc1133.1 Carica papaya HOM05D006520 ORTHO05D008405 2.0e-107 393.3 356 57.6
HanXRQChr08g0234071 Helianthus annuus HOM05D006520 ORTHO05D008405 3.5e-107 392.5 337 60.2
Lj8A167T45 Lonicera japonica HOM05D006520 ORTHO05D008405 3.5e-107 392.5 332 59.9
Thecc.07G046500 Theobroma cacao HOM05D006520 ORTHO05D008405 4.6e-107 392.1 331 59.5
PSO210G5695 Papaver somniferum HOM05D006520 ORTHO05D008405 7.8e-107 391.3 335 61.2
PSO832G0135 Papaver somniferum HOM05D006520 ORTHO05D008405 7.8e-107 391.3 335 61.2
GSVIVG01001984001 Vitis vinifera HOM05D006520 ORTHO05D008405 7.8e-107 391.3 331 59.8
CSS0025953 Camellia sinensis var. sinensis HOM05D006520 ORTHO05D008405 1.3e-106 390.6 331 60.7
arahy.Tifrunner.gnm1.ann1.45MNV2 Arachis hypogaea HOM05D006520 ORTHO05D008405 1.7e-106 390.2 332 60.5
Lj3g0004956 Lotus japonicus HOM05D006520 ORTHO05D008405 1.7e-106 390.2 341 60.1
Nitab4.5_0004600g0010 Nicotiana tabacum HOM05D006520 ORTHO05D008405 1.7e-106 390.2 343 57.1
Dinv22290 Davidia involucrata HOM05D006520 ORTHO05D008405 2.3e-106 389.8 354 58.8
ECA246G0715 Erigeron canadensis HOM05D006520 ORTHO05D008405 2.3e-106 389.8 332 59.9
Gohir.A01G076200 Gossypium hirsutum HOM05D006520 ORTHO05D008405 3.9e-106 389.0 352 57.7
Gorai.002G084200 Gossypium raimondii HOM05D006520 ORTHO05D008405 3.9e-106 389.0 352 57.7
TWI38G0825 Tripterygium wilfordii HOM05D006520 ORTHO05D008405 3.9e-106 389.0 357 57.7
VMungo1127G1053 Vigna mungo HOM05D006520 ORTHO05D008405 3.9e-106 389.0 330 62.4
Phvul.011G139475 Phaseolus vulgaris HOM05D006520 ORTHO05D008405 6.6e-106 388.3 330 62.4
Ciclev10008777m.g Citrus clementina HOM05D006520 ORTHO05D008405 1.1e-105 387.5 331 59.2
Cc05_g13380 Coffea canephora HOM05D006520 ORTHO05D008405 1.1e-105 387.5 332 58.7
RcHm_v2.0_Chr5g0037851 Rosa chinensis HOM05D006520 ORTHO05D008405 1.5e-105 387.1 352 57.1
FvH4_3g22000 Fragaria vesca HOM05D006520 ORTHO05D008405 2.5e-105 386.3 331 59.5
FAN21G1190 Fragaria x ananassa HOM05D006520 ORTHO05D008405 3.3e-105 386.0 331 59.5
Os03g0835400 Oryza sativa ssp. japonica HOM05D006520 ORTHO05D008405 3.3e-105 386.0 330 60.3
Haze_09634 Corylus avellana HOM05D006520 ORTHO05D008405 4.3e-105 385.6 366 55.7
SMO169G0265 Selaginella moellendorffii HOM05D006520 ORTHO05D008405 4.3e-105 385.6 330 63.3
FAN16G1768 Fragaria x ananassa HOM05D006520 ORTHO05D008405 7.3e-105 384.8 359 56.5
Oeu021407.1 Olea europaea HOM05D006520 ORTHO05D008405 7.3e-105 384.8 332 59.3
HPP92_026253 Vanilla planifolia HOM05D006520 ORTHO05D008405 2.1e-104 383.3 329 59.6
Sabra11G0121700 Salix brachista HOM05D006520 ORTHO05D008405 8.0e-104 381.3 362 55.0
CsaV3_3G023150 Cucumis sativus L. HOM05D006520 ORTHO05D008405 1.4e-103 380.6 331 58.9
Migut.M01795 Erythranthe guttata HOM05D006520 ORTHO05D008405 2.3e-103 379.8 332 58.4
Prupe.4G205700 Prunus persica HOM05D006520 ORTHO05D008405 2.3e-103 379.8 361 56.0
Sabra11G0121400 Salix brachista HOM05D006520 ORTHO05D008405 2.3e-103 379.8 362 54.7
MELO3C018098.2 Cucumis melo HOM05D006520 ORTHO05D008405 4.0e-103 379.0 328 58.8
Ca_18859_v3 Cicer arietinum L. HOM05D006520 ORTHO05D008405 5.2e-103 378.6 357 58.8
Medtr4g080790 Medicago truncatula HOM05D006520 ORTHO05D008405 6.8e-103 378.3 333 59.8
Peaxi162Scf01097g00110 Petunia axillaris HOM05D006520 ORTHO05D008405 2.6e-102 376.3 350 54.6
SGA_v2.0_scaffold258G45796 Striga asiatica HOM05D006520 ORTHO05D008405 7.5e-102 374.8 348 56.3
EL10Ac4g07934 Beta vulgaris HOM05D006520 ORTHO05D008405 7.0e-100 368.2 335 56.4
ClCG05G014620 Citrullus lanatus HOM05D006520 ORTHO05D008405 1.2e-99 367.5 331 58.3
Psat7g163040 Pisum sativum HOM05D006520 ORTHO05D008405 7.8e-99 364.8 332 59.0
TPR.G25908 Trifolium pratense HOM05D006520 ORTHO05D008405 2.9e-93 346.3 297 60.6
Manes.15G075200 Manihot esculenta HOM05D006520 ORTHO05D008405 4.1e-92 342.4 268 63.8
Actinidia09928 Actinidia chinensis HOM05D006520 ORTHO05D008405 2.3e-90 336.7 268 63.8
SHI31861 Sapria himalayana HOM05D006520 ORTHO05D008405 3.0e-82 309.7 373 48.5
Haze_27296 Corylus avellana HOM05D006520 ORTHO05D008405 1.6e-75 287.3 336 49.1
Cre16.g687950 Chlamydomonas reinhardtii HOM05D006520 ORTHO05D008405 6.0e-75 285.4 335 51.3
Gohir.D01G063700 Gossypium hirsutum HOM05D006520 ORTHO05D008405 7.8e-75 285.0 287 53.3
PRCOL_00001901 Prasinoderma coloniale HOM05D006520 ORTHO05D008405 1.2e-70 271.2 310 52.9
Cfa027367 Carpinus fangiana HOM05D006520 ORTHO05D008405 3.4e-70 269.6 329 49.5
Zm00001eb063680 Zea mays HOM05D006520 ORTHO05D008405 3.1e-63 246.5 240 55.0
SalBow6G5624 Salvia bowleyana HOM05D006520 ORTHO05D008405 5.3e-63 245.7 245 53.9
CDE01G0592 Ceratophyllum demersum HOM05D006520 ORTHO05D008405 2.1e-59 233.8 225 57.8
CiPaw.11G185700 Carya illinoinensis HOM05D006520 ORTHO05D008405 2.5e-57 226.9 262 48.1
Pp3c15_18800 Physcomitrium patens HOM05D006520 ORTHO05D008405 5.8e-54 215.7 131 87.0
TAR362G0323 Trochodendron aralioides HOM05D000062 ORTHO05D000043 2.9e-53 213.4 271 45.8
AagrBONN_evm.TU.Sc2ySwM_228.3593 Anthoceros agrestis HOM05D006520 ORTHO05D008405 3.9e-50 203.0 215 52.1
CsaV3_3G025180 Cucumis sativus L. HOM05D006520 ORTHO05D008405 5.1e-50 202.6 144 66.7
arahy.Tifrunner.gnm1.ann1.3QT6IB Arachis hypogaea HOM05D006520 ORTHO05D008405 4.3e-49 199.5 331 39.6
unitig_62.g23270 Utricularia gibba HOM05D006520 ORTHO05D008405 2.3e-42 177.2 181 51.9
Haze_27029 Corylus avellana HOM05D006520 ORTHO05D008405 3.0e-42 176.8 259 43.6
CsaV3_3G025190 Cucumis sativus L. HOM05D006520 ORTHO05D008405 2.4e-39 167.2 192 49.0
CsaV3_UNG094710 Cucumis sativus L. HOM05D006520 ORTHO05D008405 2.4e-39 167.2 186 52.7
Glyma.12G134400 Glycine max HOM05D006520 ORTHO05D008405 5.0e-37 159.5 140 61.4
SEGI_31254 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 9.4e-36 155.2 90 82.2
SEGI_24363 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 1.6e-35 154.5 143 55.9
CsaV3_UNG094720 Cucumis sativus L. HOM05D006520 ORTHO05D008405 1.3e-24 118.2 114 53.5
unitig_62.g23271 Utricularia gibba HOM05D006520 ORTHO05D008405 6.5e-21 105.9 66 74.2
CDE01G0120 Ceratophyllum demersum HOM05D006520 ORTHO05D008405 5.2e-18 96.3 57 77.2
SEGI_23300 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 7.5e-17 92.4 86 55.8
Actinidia27215 Actinidia chinensis HOM05D006520 ORTHO05D008405 8.0e-11 72.4 117 41.0
EL10Ac4g08085 Beta vulgaris HOM05D006520 ORTHO05D090166 5.2e-10 69.7 43 76.7
MD11G1224100 Malus domestica HOM05D006520 ORTHO05D008405 1.2e-09 68.6 45 66.7


User provided reference genes

Program Settings