Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 0.0e+00 2246.9 1186 100.0
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 0.0e+00 1371.7 1218 61.7
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 0.0e+00 1362.4 1212 62.1
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 0.0e+00 1312.0 1207 59.3
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 0.0e+00 1298.1 1239 58.9
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 0.0e+00 1297.0 1231 58.3
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1293.5 1227 58.5
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 0.0e+00 1291.2 1223 58.7
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1290.8 1227 58.5
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1286.6 1222 59.3
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1285.0 1230 58.1
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 0.0e+00 1283.1 1240 58.1
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 0.0e+00 1275.4 1224 57.6
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 0.0e+00 1274.6 1233 57.9
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 0.0e+00 1268.1 1235 57.7
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 0.0e+00 1266.5 1227 57.7
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 0.0e+00 1263.8 1231 57.6
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 0.0e+00 1260.4 1233 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 0.0e+00 1260.0 1030 65.9
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 0.0e+00 1256.1 1251 56.3
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 0.0e+00 1253.0 1226 57.0
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1251.1 1258 56.5
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 0.0e+00 1250.3 1227 57.0
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 0.0e+00 1249.2 1240 56.7
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 0.0e+00 1248.0 1239 56.7
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 0.0e+00 1246.5 1250 57.0
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 0.0e+00 1246.5 1230 57.4
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 0.0e+00 1246.5 1260 56.5
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1246.5 1256 56.8
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 0.0e+00 1246.1 1250 55.9
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1245.0 1223 57.2
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 0.0e+00 1243.4 1228 56.8
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1242.3 1253 56.7
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1241.9 1224 57.4
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 0.0e+00 1241.1 1094 62.3
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 0.0e+00 1239.9 1232 56.7
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 0.0e+00 1239.2 1238 57.0
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 0.0e+00 1238.8 1255 55.9
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 0.0e+00 1238.4 1245 56.4
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1237.6 1237 56.8
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 0.0e+00 1237.6 1237 56.8
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 0.0e+00 1237.6 1228 57.1
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1237.2 1271 56.3
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 0.0e+00 1234.2 1234 55.8
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 0.0e+00 1232.6 1212 55.7
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 0.0e+00 1230.3 1186 57.6
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 0.0e+00 1228.8 1232 56.7
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 0.0e+00 1228.4 1148 58.7
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1224.9 1205 57.3
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 0.0e+00 1224.9 1250 55.8
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 0.0e+00 1224.9 1238 56.3
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 0.0e+00 1224.2 1233 56.4
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 0.0e+00 1223.4 1236 56.4
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 0.0e+00 1219.5 1248 55.2
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 0.0e+00 1218.4 1243 55.7
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 0.0e+00 1218.0 1273 54.4
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1217.6 1220 56.7
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 0.0e+00 1216.4 1242 55.6
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 0.0e+00 1212.6 1247 55.6
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 0.0e+00 1212.2 1247 55.3
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 0.0e+00 1211.8 1245 55.0
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1210.7 1175 57.4
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 0.0e+00 1210.3 1247 55.7
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 0.0e+00 1208.7 1245 55.6
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 0.0e+00 1206.4 1242 55.0
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 0.0e+00 1203.0 1249 54.6
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 0.0e+00 1202.6 1247 54.9
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1201.4 1247 54.4
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 0.0e+00 1200.3 1240 55.5
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 0.0e+00 1199.9 1217 56.3
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 0.0e+00 1199.5 1243 54.4
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1199.1 1253 54.4
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1199.1 1217 56.5
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 0.0e+00 1198.7 1245 54.5
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1198.0 1243 54.5
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1197.2 1240 54.7
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1196.0 1241 54.6
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 0.0e+00 1195.3 1243 54.4
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1194.5 1254 54.4
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 0.0e+00 1194.5 1247 54.2
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 0.0e+00 1193.3 1311 52.8
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 0.0e+00 1188.7 1243 54.8
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 0.0e+00 1183.3 1220 55.2
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 0.0e+00 1182.9 1274 53.4
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1172.9 1255 54.1
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1164.4 1276 53.4
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 0.0e+00 1160.2 1078 58.3
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 0.0e+00 1158.3 1257 53.8
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1155.6 1307 51.9
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 0.0e+00 1139.4 1072 58.2
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1131.3 1056 58.9
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1129.0 1243 52.1
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1088.2 1014 58.5
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1077.8 1249 51.5
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 8.1e-312 1073.5 952 60.8
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 1.5e-308 1063.1 1141 53.5
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 2.7e-305 1052.4 1101 55.2
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.4e-301 1040.0 1022 56.9
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 1.6e-286 989.9 1142 51.6
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 5.8e-284 981.5 880 59.8
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 3.6e-278 962.2 941 56.3
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 1.3e-262 910.6 903 57.0
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 5.5e-258 895.2 884 57.5
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 8.4e-251 871.3 841 58.9
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 3.9e-248 862.4 915 54.9
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 1.7e-219 767.3 748 57.2
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 3.5e-204 716.5 800 52.8
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 4.7e-201 706.1 561 66.1
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 2.9e-190 670.2 668 56.0
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.4e-184 651.4 558 63.4
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 6.4e-174 615.9 597 56.8
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 1.9e-173 614.4 452 69.2
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 8.9e-168 595.5 616 54.9
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 3.1e-160 570.5 529 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2998 Anthoceros agrestis HOM05D003771 ORTHO05D004396 8.5e-118 429.5 291 72.9
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 1.4e-117 428.7 461 52.1
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 1.0e-115 422.5 516 48.3
HanXRQChr05g0138111 Helianthus annuus HOM05D003771 ORTHO05D004396 1.0e-115 422.5 372 59.9
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 7.2e-109 399.8 428 51.9
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 2.1e-108 398.3 476 51.9
FAN12G3555 Fragaria x ananassa HOM05D003771 ORTHO05D004396 4.0e-99 367.5 431 50.8
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 8.2e-97 359.8 444 48.2
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 4.5e-95 354.0 308 65.3
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 4.5e-95 354.0 308 65.3
RcHm_v2.0_Chr4g0384821 Rosa chinensis HOM05D003771 ORTHO05D004396 4.0e-83 314.3 217 71.0
Zm00001eb307240 Zea mays HOM05D003771 ORTHO05D004396 6.8e-83 313.5 202 74.8
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 6.1e-76 290.4 295 54.9
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-66 257.3 347 43.2
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 5.6e-61 240.7 291 49.5
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 7.3e-61 240.4 179 70.4
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 2.0e-58 232.3 281 49.5
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 1.9e-53 215.7 240 51.2
Zm00001eb154330 Zea mays HOM05D003771 ORTHO05D004396 3.6e-52 211.5 142 74.6
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.4e-51 209.5 317 41.6
unitig_899.g15420 Utricularia gibba HOM05D003771 ORTHO05D004396 4.2e-40 171.4 210 48.6
Solyc05g025750.3 Solanum lycopersicum HOM05D003771 ORTHO05D004396 5.4e-40 171.0 207 48.8
arahy.Tifrunner.gnm1.ann1.523GVR Arachis hypogaea HOM05D003771 ORTHO05D004396 1.6e-39 169.5 122 63.1
Peaxi162Scf00322g01516 Petunia axillaris HOM05D003771 ORTHO05D004396 2.1e-39 169.1 207 48.3
Lsat_1_v5_gn_8_70001 Lactuca sativa HOM05D003771 ORTHO05D004396 2.7e-39 168.7 200 49.5
arahy.Tifrunner.gnm1.ann1.Q9DYE1 Arachis hypogaea HOM05D003771 ORTHO05D004396 6.6e-38 164.1 117 62.4
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 2.0e-34 152.5 553 29.7
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 7.6e-34 150.6 144 54.9
CDE07G0913 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 1.6e-31 142.9 224 44.2
RcHm_v2.0_Chr4g0384831 Rosa chinensis HOM05D003771 ORTHO05D004396 3.5e-31 141.7 262 40.8
COL.COLO4_38524 Corchorus olitorius HOM05D003771 ORTHO05D004396 1.1e-29 136.7 109 64.2
MD07G1055300 Malus domestica HOM05D003771 ORTHO05D004396 2.8e-28 132.1 197 43.7
Psat0s1568g0040 Pisum sativum HOM05D003771 ORTHO05D004396 2.2e-25 122.5 77 79.2
Haze_19082 Corylus avellana HOM05D003771 ORTHO05D004396 6.4e-25 120.9 230 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2999 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.2e-24 118.6 243 37.4
TPR.G14800 Trifolium pratense HOM05D003771 ORTHO05D004396 3.2e-24 118.6 258 37.6
MCO15G147 Micromonas commoda HOM05D003771 ORTHO05D004396 4.2e-24 118.2 981 24.4
AagrBONN_evm.TU.Sc2ySwM_369.332 Anthoceros agrestis HOM05D003771 ORTHO05D004396 7.1e-24 117.5 238 37.8
Cre08.g384864 Chlamydomonas reinhardtii HOM05D003771 ORTHO05D004396 1.6e-23 116.3 1080 23.1
vmacro20749 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 2.1e-23 115.9 256 35.5
Psat6g005640 Pisum sativum HOM05D003771 ORTHO05D004396 6.0e-23 114.4 101 57.4
Lju50A19G12 Lonicera japonica HOM05D003771 ORTHO05D004396 7.9e-23 114.0 65 81.5
arahy.Tifrunner.gnm1.ann1.F6FNE6 Arachis hypogaea HOM05D003771 ORTHO05D004396 1.0e-22 113.6 90 56.7
Oeu036957.1 Olea europaea HOM05D003771 ORTHO05D004396 6.2e-20 104.4 71 71.8
TAR633G1498 Trochodendron aralioides HOM05D003771 ORTHO05D004396 1.1e-19 103.6 137 50.4
Lsat_1_v5_gn_5_155680 Lactuca sativa HOM05D003771 ORTHO05D004396 1.8e-19 102.8 173 41.0
HanXRQChr05g0138121 Helianthus annuus HOM05D003771 ORTHO05D004396 3.4e-18 98.6 58 77.6
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 3.4e-18 98.6 75 68.0
Rhsim01G0108400 Rhododendron simsii HOM05D000041 ORTHO05D000452 4.5e-18 98.2 126 45.2
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 1.0e-17 97.1 79 60.8
Psat3g071280 Pisum sativum HOM05D000062 ORTHO05D004396 7.1e-16 90.9 99 53.5
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 6.0e-15 87.8 83 60.2
Psat0ss6263g0280 Pisum sativum HOM05D041104 ORTHO05D004396 1.1e-13 83.6 89 55.1
Psat5g077000 Pisum sativum HOM05D000062 ORTHO05D004396 1.1e-13 83.6 91 53.8
Oeu036959.1 Olea europaea HOM05D003771 ORTHO05D004396 9.7e-13 80.5 132 44.7
Lsat_1_v5_gn_4_142760 Lactuca sativa HOM05D003771 ORTHO05D012343 4.8e-12 78.2 101 45.5
MD07G1055200 Malus domestica HOM05D003771 ORTHO05D004396 1.1e-11 77.0 192 34.9
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.8e-11 76.3 148 39.2
PSO782G3302 Papaver somniferum HOM05D003771 ORTHO05D004396 6.9e-11 74.3 111 44.1
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 1.5e-10 73.2 77 57.1
Peaxi162Scf00322g01518 Petunia axillaris HOM05D003771 ORTHO05D004396 8.5e-09 67.4 99 41.4
Lsat_1_v5_gn_7_78841 Lactuca sativa HOM05D003771 ORTHO05D004396 9.4e-08 63.9 94 40.4
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 3.6e-07 62.0 51 64.7
arahy.Tifrunner.gnm1.ann1.ACA5RJ Arachis hypogaea HOM05D003771 ORTHO05D004396 6.1e-07 61.2 116 35.3


User provided reference genes

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