Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 8.5e-103 377.1 202 100.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 5.9e-88 327.8 200 89.0
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 6.0e-56 221.5 210 64.8
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 4.1e-49 198.7 129 74.4
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 4.7e-45 185.3 118 72.9
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 6.6e-39 164.9 197 49.2
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 8.7e-39 164.5 196 51.0
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.3e-38 162.5 126 61.9
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.3e-37 160.6 154 53.2
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.3e-37 160.6 154 53.2
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.8e-37 159.5 154 53.2
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 4.8e-37 158.7 170 49.4
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 6.2e-37 158.3 147 55.1
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 6.2e-37 158.3 167 51.5
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-36 157.5 154 51.3
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.4e-36 157.1 151 53.6
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.4e-36 157.1 150 52.7
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.8e-36 156.8 184 47.3
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.8e-36 156.8 194 47.4
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.8e-36 156.8 122 59.8
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.4e-36 156.4 122 58.2
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.1e-36 156.0 164 50.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.1e-36 156.0 152 52.6
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 3.1e-36 156.0 191 49.7
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.0e-36 155.6 150 53.3
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.0e-36 155.6 148 53.4
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 4.0e-36 155.6 113 62.8
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.0e-36 155.6 112 63.4
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 4.0e-36 155.6 122 59.8
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 5.3e-36 155.2 177 48.6
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 5.3e-36 155.2 152 52.6
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 5.3e-36 155.2 186 46.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 6.9e-36 154.8 116 61.2
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 9.0e-36 154.5 150 52.0
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.2e-35 154.1 112 62.5
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.2e-35 154.1 152 50.0
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.2e-35 154.1 154 51.3
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 1.2e-35 154.1 124 59.7
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.2e-35 154.1 149 52.3
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.5e-35 153.7 204 45.6
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 2.0e-35 153.3 108 63.0
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.0e-35 153.3 113 61.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 2.0e-35 153.3 113 62.8
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.0e-35 153.3 113 61.9
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.0e-35 153.3 130 54.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 2.6e-35 152.9 149 53.0
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 2.6e-35 152.9 149 53.0
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.6e-35 152.9 124 58.9
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.6e-35 152.9 108 63.9
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 3.4e-35 152.5 122 59.8
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.4e-35 152.5 122 59.8
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 4.4e-35 152.1 122 59.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 4.4e-35 152.1 133 56.4
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 4.4e-35 152.1 152 51.3
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 4.4e-35 152.1 108 63.9
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 5.8e-35 151.8 152 50.7
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.8e-35 151.8 116 58.6
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 7.6e-35 151.4 136 52.9
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 7.6e-35 151.4 108 64.8
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.6e-35 151.4 210 45.7
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 7.6e-35 151.4 113 61.1
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.6e-35 151.4 124 57.3
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 7.6e-35 151.4 107 66.4
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 9.9e-35 151.0 122 59.0
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.3e-34 150.6 108 63.9
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.3e-34 150.6 121 59.5
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-34 150.6 113 61.1
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-34 150.6 121 59.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-34 150.6 121 59.5
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-34 150.2 106 64.2
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.7e-34 150.2 106 64.2
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.7e-34 150.2 106 64.2
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.2e-34 149.8 190 43.7
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.2e-34 149.8 187 45.5
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 2.2e-34 149.8 202 45.5
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.2e-34 149.8 113 60.2
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 3.8e-34 149.1 122 56.6
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 4.9e-34 148.7 113 60.2
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 6.4e-34 148.3 116 57.8
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 8.4e-34 147.9 201 46.3
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-33 147.5 113 59.3
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.1e-33 147.5 118 56.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.1e-33 147.5 106 63.2
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.4e-33 146.4 174 47.1
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.4e-33 146.4 133 51.1
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.2e-33 146.0 194 46.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 4.2e-33 145.6 154 48.1
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 5.4e-33 145.2 116 56.9
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 7.1e-33 144.8 192 45.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.3e-33 144.4 188 46.8
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.3e-33 144.4 188 46.8
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 9.3e-33 144.4 115 58.3
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 9.3e-33 144.4 200 45.5
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 9.3e-33 144.4 203 42.9
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.2e-32 144.1 116 58.6
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.6e-32 143.7 116 56.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.1e-32 143.3 106 59.4
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-32 142.9 206 43.2
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-32 142.9 206 43.2
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.7e-32 142.9 206 43.2
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.7e-32 142.9 182 47.8
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 2.7e-32 142.9 200 45.5
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 2.7e-32 142.9 200 45.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 3.5e-32 142.5 200 45.5
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 4.6e-32 142.1 200 44.5
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 4.6e-32 142.1 116 56.9
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 6.0e-32 141.7 206 42.7
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 6.0e-32 141.7 183 43.2
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.3e-31 140.6 116 53.4
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.3e-31 139.8 206 43.2
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.3e-31 139.8 193 42.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.0e-31 139.4 204 45.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 3.9e-31 139.0 106 58.5
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 6.6e-31 138.3 206 43.2
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 6.6e-31 138.3 206 41.7
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 8.7e-31 137.9 206 42.7
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 8.7e-31 137.9 206 42.7
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 8.7e-31 137.9 206 42.7
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 8.7e-31 137.9 97 63.9
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.1e-30 137.5 123 52.0
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.5e-30 137.1 100 61.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.9e-30 136.7 206 42.7
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.3e-30 135.6 211 40.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 7.3e-30 134.8 102 58.8
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.6e-29 132.5 152 46.1
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.4e-28 129.8 201 39.8
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 4.0e-28 129.0 198 41.9
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.0e-28 127.9 195 43.1
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 9.0e-28 127.9 196 41.8
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 7.6e-27 124.8 90 61.1
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.1e-25 120.9 128 49.2
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-23 114.0 225 39.6
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 4.3e-22 109.0 168 40.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 5.6e-22 108.6 76 64.5
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.5e-19 100.5 300 30.7
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.0e-18 97.8 153 39.9
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.9e-18 96.3 67 65.7
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.9e-18 96.3 67 65.7
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.2e-16 90.9 70 58.6
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 8.7e-15 84.7 117 41.0
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.9e-09 67.0 55 54.5
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 5.5e-09 65.5 50 58.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.7e-07 58.5 123 37.4
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 4.3e-06 55.8 36 61.1


User provided reference genes

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